Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46913 * 2 1 4 4 H 1.09003 * 115.55951 * 29.31922 * 3 2 1 5 5 C 1.52997 * 117.50222 * 243.62290 * 3 2 1 6 6 C 1.52995 * 60.00173 * 252.51286 * 5 3 2 7 7 H 1.09000 * 117.50337 * 107.51299 * 6 5 3 8 8 N 1.46899 * 117.49838 * 252.51069 * 6 5 3 9 9 C 1.46906 * 111.00141 * 223.60649 * 8 6 5 10 10 C 1.52998 * 109.47215 * 179.97438 * 9 8 6 11 11 O 1.42897 * 109.46795 * 65.00306 * 10 9 8 12 12 C 1.42905 * 113.99899 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47179 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.09000 * 109.47584 * 59.99397 * 1 2 3 22 22 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47050 * 299.99544 * 1 2 3 24 24 H 1.08997 * 109.47268 * 240.00631 * 2 1 3 25 25 H 1.08994 * 109.47418 * 119.99936 * 2 1 3 26 26 H 1.08997 * 117.50124 * 145.02312 * 5 3 2 27 27 H 1.08999 * 117.51450 * 359.97438 * 5 3 2 28 28 H 1.00895 * 111.00221 * 99.65714 * 8 6 5 29 29 H 1.09000 * 109.46758 * 60.00031 * 9 8 6 30 30 H 1.08993 * 109.47047 * 300.00608 * 9 8 6 31 31 H 1.08995 * 109.47274 * 305.00344 * 10 9 8 32 32 H 1.09002 * 109.46559 * 184.99809 * 10 9 8 33 33 H 1.09007 * 109.46810 * 59.99780 * 12 11 10 34 34 H 1.09003 * 109.46936 * 300.00543 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2158 6 6 3.5501 1.6580 0.1182 7 1 4.1806 0.7723 0.1959 8 7 4.0108 2.8317 0.8719 9 6 5.3628 2.6175 1.4052 10 6 5.8074 3.8587 2.1815 11 8 4.9714 4.0282 3.3279 12 6 5.3041 5.1653 4.1269 13 6 4.3643 5.2458 5.3022 14 1 3.5906 4.5027 5.4269 15 6 4.4922 6.2682 6.2184 16 7 5.4347 7.1729 6.0669 17 14 3.3268 6.3683 7.6748 18 1 3.6727 7.5500 8.5052 19 1 1.9314 6.4989 7.1841 20 1 3.4504 5.1355 8.4934 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.7211 2.9429 -1.5342 27 1 3.0100 1.1862 -2.0157 28 1 3.3637 3.0642 1.6103 29 1 6.0538 2.4377 0.5816 30 1 5.3583 1.7544 2.0707 31 1 5.7271 4.7364 1.5403 32 1 6.8422 3.7357 2.5014 33 1 5.2137 6.0704 3.5262 34 1 6.3284 5.0691 4.4871 35 1 5.5244 7.8923 6.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385782068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = -42.802937 kcal Electronic energy + Delta-G solvation = -13790.743778 eV Core-core repulsion = 11402.856115 eV Total energy + Delta-G solvation = -2387.887662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.38311 -36.80948 -34.13170 -32.66105 -31.54874 -28.14559 -26.48806 -23.89312 -22.36645 -21.61725 -21.01436 -20.35744 -16.44006 -16.00137 -15.60856 -15.21546 -14.79726 -14.57187 -14.27481 -13.66898 -13.30504 -12.83815 -12.50231 -12.13303 -12.10639 -11.61501 -11.36047 -11.27977 -11.08354 -10.82377 -10.77900 -10.69237 -10.30115 -10.04824 -9.77859 -9.11567 -8.81691 -8.16724 -8.05441 -6.10293 -4.12233 3.32357 3.35062 3.38806 3.82693 4.15723 4.35275 4.75838 4.91550 4.95415 5.08476 5.20629 5.26050 5.27916 5.41048 5.52374 5.67258 5.70867 5.75508 5.83448 5.93869 6.02131 6.06433 6.13284 6.22570 6.32526 6.37314 7.11848 7.28482 7.44497 7.64253 7.79100 8.15786 8.58078 9.00458 9.52527 11.01218 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032159 B = 0.005324 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.461440 B = 5257.499601 C = 5948.725508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.165 4.165 4 H 0.107 0.893 5 C -0.168 4.168 6 C 0.023 3.977 7 H 0.095 0.905 8 N -0.658 5.658 9 C 0.068 3.932 10 C 0.061 3.939 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.516 4.516 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.275 1.275 20 H -0.275 1.275 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.358 0.642 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.006 0.994 34 H 0.004 0.996 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 -11.777 -12.041 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.184 4.184 4 H 0.125 0.875 5 C -0.206 4.206 6 C -0.088 4.088 7 H 0.113 0.887 8 N -0.290 5.290 9 C -0.061 4.061 10 C -0.017 4.017 11 O -0.320 6.320 12 C 0.123 3.877 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.211 1.211 19 H -0.200 1.200 20 H -0.201 1.201 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.179 0.821 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.022 0.978 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.468 -11.378 -12.433 17.436 hybrid contribution -0.400 -0.173 1.407 1.473 sum -4.868 -11.552 -11.025 16.694 Atomic orbital electron populations 1.21740 0.95539 1.01319 1.02036 1.21110 0.95980 0.94294 1.01647 1.22790 0.94135 0.97915 1.03606 0.87509 1.23294 1.03685 1.02298 0.91338 1.22476 0.93448 0.93803 0.99106 0.88705 1.60228 1.04382 1.33687 1.30720 1.21992 0.90413 0.97014 0.96683 1.22305 0.93864 0.96720 0.88793 1.87786 1.56421 1.50767 1.37018 1.20177 0.95842 0.82480 0.89213 1.21015 1.15855 1.11176 1.07357 0.91686 1.24947 0.95961 0.95208 0.98332 1.69956 1.32584 1.14369 1.36849 0.86397 0.80922 0.77501 0.81655 1.21132 1.20005 1.20057 0.92672 0.92945 0.92542 0.92088 0.91857 0.88496 0.89268 0.82124 0.90602 0.94605 0.93531 0.94032 0.97601 0.97803 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.87 37.16 0.37 -0.95 16 2 C -0.09 -0.90 6.22 -26.73 -0.17 -1.06 16 3 C -0.17 -1.90 5.54 -90.62 -0.50 -2.40 16 4 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 5 C -0.17 -1.91 10.10 -26.74 -0.27 -2.18 16 6 C 0.02 0.29 5.98 -67.72 -0.40 -0.12 16 7 H 0.10 1.14 7.90 -51.93 -0.41 0.73 16 8 N -0.66 -10.28 6.75 -106.73 -0.72 -11.00 16 9 C 0.07 1.07 5.96 -3.82 -0.02 1.04 16 10 C 0.06 1.16 6.28 37.16 0.23 1.40 16 11 O -0.40 -9.68 9.85 -35.23 -0.35 -10.03 16 12 C 0.20 5.48 5.69 36.00 0.20 5.69 16 13 C -0.52 -15.30 9.43 -34.44 -0.32 -15.63 16 14 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 17 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 28 H 0.36 6.18 8.24 -39.29 -0.32 5.85 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.01 0.18 8.14 -51.92 -0.42 -0.25 16 34 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -30.43 297.06 -8.03 -38.47 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.17 Total: 0.19 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.98 Total: -12.65 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.02 Total: -37.38 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.35 Total: -10.03 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.43 -8.03 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.336 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds