Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46913 * 2 1 4 4 H 1.09003 * 115.55951 * 29.31922 * 3 2 1 5 5 C 1.52997 * 117.50222 * 243.62290 * 3 2 1 6 6 C 1.52995 * 60.00173 * 252.51286 * 5 3 2 7 7 H 1.09000 * 117.50337 * 107.51299 * 6 5 3 8 8 N 1.46899 * 117.49838 * 252.51069 * 6 5 3 9 9 C 1.46906 * 111.00141 * 223.60649 * 8 6 5 10 10 C 1.52998 * 109.47215 * 179.97438 * 9 8 6 11 11 O 1.42897 * 109.46795 * 65.00306 * 10 9 8 12 12 C 1.42905 * 113.99899 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47179 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.09000 * 109.47584 * 59.99397 * 1 2 3 22 22 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47050 * 299.99544 * 1 2 3 24 24 H 1.08997 * 109.47268 * 240.00631 * 2 1 3 25 25 H 1.08994 * 109.47418 * 119.99936 * 2 1 3 26 26 H 1.08997 * 117.50124 * 145.02312 * 5 3 2 27 27 H 1.08999 * 117.51450 * 359.97438 * 5 3 2 28 28 H 1.00895 * 111.00221 * 99.65714 * 8 6 5 29 29 H 1.09000 * 109.46758 * 60.00031 * 9 8 6 30 30 H 1.08993 * 109.47047 * 300.00608 * 9 8 6 31 31 H 1.08995 * 109.47274 * 305.00344 * 10 9 8 32 32 H 1.09002 * 109.46559 * 184.99809 * 10 9 8 33 33 H 1.09007 * 109.46810 * 59.99780 * 12 11 10 34 34 H 1.09003 * 109.46936 * 300.00543 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2158 6 6 3.5501 1.6580 0.1182 7 1 4.1806 0.7723 0.1959 8 7 4.0108 2.8317 0.8719 9 6 5.3628 2.6175 1.4052 10 6 5.8074 3.8587 2.1815 11 8 4.9714 4.0282 3.3279 12 6 5.3041 5.1653 4.1269 13 6 4.3643 5.2458 5.3022 14 1 3.5906 4.5027 5.4269 15 6 4.4922 6.2682 6.2184 16 7 5.4347 7.1729 6.0669 17 14 3.3268 6.3683 7.6748 18 1 3.6727 7.5500 8.5052 19 1 1.9314 6.4989 7.1841 20 1 3.4504 5.1355 8.4934 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.7211 2.9429 -1.5342 27 1 3.0100 1.1862 -2.0157 28 1 3.3637 3.0642 1.6103 29 1 6.0538 2.4377 0.5816 30 1 5.3583 1.7544 2.0707 31 1 5.7271 4.7364 1.5403 32 1 6.8422 3.7357 2.5014 33 1 5.2137 6.0704 3.5262 34 1 6.3284 5.0691 4.4871 35 1 5.5244 7.8923 6.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385782068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = -62.803998 kcal Electronic energy + Delta-G solvation = -13791.611089 eV Core-core repulsion = 11402.856115 eV Total energy + Delta-G solvation = -2388.754973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.46760 -38.52416 -35.50505 -34.69554 -32.51497 -29.92563 -28.29401 -24.67960 -24.54266 -23.00121 -22.04852 -21.27712 -18.64693 -17.57572 -17.04932 -16.60098 -16.42193 -15.96417 -15.38504 -15.11785 -14.93896 -14.01328 -13.80285 -13.41344 -13.28313 -13.04656 -12.87757 -12.75152 -12.59533 -12.37860 -12.11773 -11.93127 -11.86465 -11.37088 -11.28975 -10.89428 -10.71836 -10.25083 -9.20658 -8.32894 -6.45750 1.39559 1.44384 1.52835 2.33983 2.86490 3.00977 3.06034 3.20711 3.86909 4.01171 4.18047 4.19485 4.30151 4.40396 4.44838 4.52398 4.59945 4.76909 4.79731 4.86770 4.90763 4.96440 5.05334 5.15776 5.17082 5.28134 5.29498 5.49893 5.53234 5.94254 6.14465 6.32998 6.51335 6.79488 7.26174 8.79362 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032159 B = 0.005324 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.461440 B = 5257.499601 C = 5948.725508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.162 4.162 4 H 0.092 0.908 5 C -0.157 4.157 6 C 0.007 3.993 7 H 0.108 0.892 8 N -0.670 5.670 9 C 0.078 3.922 10 C 0.053 3.947 11 O -0.409 6.409 12 C 0.211 3.789 13 C -0.550 4.550 14 H 0.062 0.938 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.275 1.275 19 H -0.265 1.265 20 H -0.265 1.265 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.343 0.657 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.051 0.949 33 H -0.016 1.016 34 H -0.014 1.014 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -12.940 -12.225 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.181 4.181 4 H 0.110 0.890 5 C -0.195 4.195 6 C -0.104 4.104 7 H 0.125 0.875 8 N -0.301 5.301 9 C -0.051 4.051 10 C -0.024 4.024 11 O -0.329 6.329 12 C 0.136 3.864 13 C -0.588 4.588 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.806 3.194 18 H -0.199 1.199 19 H -0.190 1.190 20 H -0.190 1.190 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.162 0.838 29 H 0.123 0.877 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.002 0.998 34 H 0.004 0.996 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.271 -12.561 -12.651 18.591 hybrid contribution -0.102 0.180 1.372 1.387 sum -5.373 -12.381 -11.279 17.589 Atomic orbital electron populations 1.21736 0.94962 1.02116 1.01761 1.21115 0.96467 0.92906 1.02223 1.22818 0.93063 0.98854 1.03415 0.88977 1.23330 1.02462 1.02366 0.91337 1.22599 0.94537 0.93339 0.99887 0.87486 1.60269 1.04043 1.35595 1.30219 1.21948 0.91182 0.94835 0.97097 1.22618 0.93966 0.98460 0.87352 1.87751 1.57720 1.49104 1.38370 1.19807 0.94612 0.82865 0.89157 1.21358 1.16627 1.12029 1.08737 0.91951 1.25973 0.97615 0.94264 1.01320 1.70068 1.34018 1.14838 1.38081 0.85226 0.78520 0.78125 0.77490 1.19943 1.19012 1.18967 0.92394 0.91613 0.93418 0.90645 0.92094 0.89529 0.87009 0.83761 0.87705 0.94540 0.93958 0.93039 0.99783 0.99620 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.87 71.98 0.71 -1.66 16 2 C -0.09 -1.56 6.22 30.59 0.19 -1.37 16 3 C -0.16 -3.54 5.54 -10.79 -0.06 -3.60 16 4 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 5 C -0.16 -3.28 10.10 30.59 0.31 -2.97 16 6 C 0.01 0.16 5.98 44.91 0.27 0.43 16 7 H 0.11 2.34 7.90 -2.39 -0.02 2.32 16 8 N -0.67 -20.65 6.75 -491.58 -3.32 -23.97 16 9 C 0.08 2.37 5.96 86.30 0.51 2.88 16 10 C 0.05 2.04 6.28 71.98 0.45 2.49 16 11 O -0.41 -20.25 9.85 -148.98 -1.47 -21.72 16 12 C 0.21 12.09 5.69 71.23 0.41 12.49 16 13 C -0.55 -33.16 9.43 25.60 0.24 -32.92 16 14 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 15 C 0.01 0.40 5.46 84.66 0.46 0.86 16 16 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 17 Si 0.98 44.63 29.54 68.60 2.03 46.65 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 24 H 0.07 1.11 7.88 -2.39 -0.02 1.09 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.11 1.83 8.03 -2.39 -0.02 1.81 16 28 H 0.34 12.04 8.24 -89.70 -0.74 11.30 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 34 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.04 297.06 1.32 -63.72 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.30 Total: 15.00 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.49 Total: -23.38 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -3.03 Total: -80.28 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.47 Total: -21.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.04 1.32 -63.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.919 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds