Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 H 1.09002 * 115.55067 * 330.58069 * 3 2 1 5 5 C 1.53005 * 117.49765 * 116.25082 * 3 2 1 6 6 C 1.52999 * 117.51737 * 184.88103 * 3 2 1 7 7 H 1.08995 * 117.49797 * 145.02727 * 6 3 2 8 8 N 1.46903 * 117.49875 * 0.02562 * 6 3 2 9 9 C 1.46902 * 110.99835 * 155.00128 * 8 6 3 10 10 C 1.52995 * 109.47042 * 180.02562 * 9 8 6 11 11 O 1.42904 * 109.47547 * 65.00089 * 10 9 8 12 12 C 1.42895 * 114.00301 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46794 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00550 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99539 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00393 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47210 * 119.99808 * 17 15 13 20 20 H 1.48504 * 109.46716 * 240.00196 * 17 15 13 21 21 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47640 * 300.00486 * 1 2 3 23 23 H 1.09005 * 109.47079 * 60.00480 * 1 2 3 24 24 H 1.08995 * 109.47632 * 240.00117 * 2 1 3 25 25 H 1.09005 * 109.47079 * 119.99520 * 2 1 3 26 26 H 1.09004 * 117.49360 * 215.00124 * 5 3 2 27 27 H 1.08995 * 117.49694 * 359.97438 * 5 3 2 28 28 H 1.00899 * 110.99759 * 31.05168 * 8 6 3 29 29 H 1.09004 * 109.46971 * 300.00099 * 9 8 6 30 30 H 1.08995 * 109.47284 * 60.00403 * 9 8 6 31 31 H 1.09002 * 109.47297 * 184.99826 * 10 9 8 32 32 H 1.09004 * 109.47331 * 304.99732 * 10 9 8 33 33 H 1.08996 * 109.46993 * 299.99742 * 12 11 10 34 34 H 1.09001 * 109.47380 * 60.00124 * 12 11 10 35 35 H 0.96998 * 120.00420 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3890 2.1713 -0.4831 5 6 2.8414 1.9085 1.2172 6 6 3.5502 1.6584 -0.1155 7 1 3.8929 2.5291 -0.6744 8 7 4.4001 0.4646 -0.2184 9 6 5.6670 0.7770 -0.8932 10 6 6.5230 -0.4880 -0.9820 11 8 5.8734 -1.4448 -1.8216 12 6 6.5934 -2.6699 -1.9718 13 6 5.8204 -3.5996 -2.8714 14 1 4.8739 -3.2865 -3.2865 15 6 6.3218 -4.8502 -3.1644 16 7 7.4742 -5.2319 -2.6586 17 14 5.3640 -6.0025 -4.2801 18 1 4.1078 -5.3403 -4.7143 19 1 6.1861 -6.3350 -5.4712 20 1 5.0365 -7.2482 -3.5410 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.7176 2.9439 1.5349 27 1 3.0049 1.1875 2.0181 28 1 3.9152 -0.2849 -0.6887 29 1 5.4620 1.1478 -1.8975 30 1 6.2022 1.5391 -0.3267 31 1 7.4975 -0.2386 -1.4018 32 1 6.6538 -0.9090 0.0149 33 1 7.5695 -2.4661 -2.4119 34 1 6.7252 -3.1360 -0.9953 35 1 7.8270 -6.1115 -2.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385782081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -42.042556 kcal Electronic energy + Delta-G solvation = -14012.012892 eV Core-core repulsion = 11624.158203 eV Total energy + Delta-G solvation = -2387.854690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.46745 -36.78326 -33.88305 -32.61605 -31.58419 -28.17243 -26.48996 -23.93822 -22.35741 -21.51645 -21.31882 -19.78308 -16.46547 -15.93675 -15.76186 -15.23305 -14.99041 -14.39754 -14.12850 -13.62422 -13.27610 -12.84491 -12.43966 -12.15062 -11.93082 -11.51879 -11.33884 -11.25790 -10.97943 -10.80483 -10.76300 -10.66460 -10.27848 -10.03557 -9.70925 -9.09145 -8.82778 -8.17104 -8.05086 -6.10857 -4.12613 3.28999 3.35429 3.41611 3.85831 4.21948 4.35123 4.73293 4.92967 4.99676 5.20592 5.25690 5.26075 5.41543 5.47085 5.55421 5.71049 5.73910 5.78357 5.93589 6.06291 6.09575 6.16616 6.20060 6.23398 6.37161 6.43960 7.11843 7.29354 7.44352 7.65938 7.79301 8.15456 8.57787 9.00833 9.52327 11.00730 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.006161 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.633673 B = 4543.490794 C = 5321.664306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.163 4.163 4 H 0.100 0.900 5 C -0.170 4.170 6 C 0.020 3.980 7 H 0.095 0.905 8 N -0.656 5.656 9 C 0.068 3.932 10 C 0.061 3.939 11 O -0.400 6.400 12 C 0.197 3.803 13 C -0.514 4.514 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.358 0.642 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 12.530 5.365 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.182 4.182 4 H 0.118 0.882 5 C -0.208 4.208 6 C -0.091 4.091 7 H 0.113 0.887 8 N -0.290 5.290 9 C -0.062 4.062 10 C -0.017 4.017 11 O -0.320 6.320 12 C 0.122 3.878 13 C -0.552 4.552 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.208 1.208 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.180 0.820 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.418 12.450 5.886 16.140 hybrid contribution -0.295 -0.587 -1.298 1.455 sum -8.714 11.862 4.588 15.417 Atomic orbital electron populations 1.21722 0.95721 1.01552 1.01348 1.21025 0.95509 0.93999 1.02790 1.22706 0.93804 0.98459 1.03270 0.88213 1.23245 1.03802 1.01462 0.92307 1.22442 0.91138 0.95087 1.00400 0.88741 1.60218 1.05107 1.07215 1.56436 1.21996 0.90798 0.96822 0.96538 1.22308 0.94578 0.89900 0.94909 1.87784 1.48852 1.27465 1.67876 1.20183 0.91848 0.79702 0.96033 1.21091 1.06688 0.98593 1.28858 0.91580 1.24951 0.95221 0.97848 0.96484 1.69971 1.18702 1.20408 1.44659 0.86297 0.79903 0.80316 0.80068 1.19514 1.20851 1.20811 0.92666 0.92954 0.93008 0.91352 0.91222 0.89376 0.88403 0.81994 0.94639 0.90583 0.94037 0.93533 0.97799 0.97603 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 37.16 0.37 -1.13 16 2 C -0.10 -1.16 5.29 -26.73 -0.14 -1.30 16 3 C -0.16 -1.88 5.73 -90.61 -0.52 -2.40 16 4 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 5 C -0.17 -1.93 10.11 -26.73 -0.27 -2.20 16 6 C 0.02 0.26 6.24 -67.71 -0.42 -0.16 16 7 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 8 N -0.66 -10.22 6.56 -106.72 -0.70 -10.92 16 9 C 0.07 1.06 5.96 -3.83 -0.02 1.03 16 10 C 0.06 1.16 6.28 37.15 0.23 1.39 16 11 O -0.40 -9.64 9.85 -35.23 -0.35 -9.98 16 12 C 0.20 5.44 5.69 36.01 0.20 5.65 16 13 C -0.51 -15.20 9.43 -34.44 -0.32 -15.53 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.93 7.33 -51.93 -0.38 0.55 16 25 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 1.19 8.03 -51.93 -0.42 0.78 16 28 H 0.36 6.16 6.62 -39.29 -0.26 5.90 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -30.35 293.99 -7.96 -38.31 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.07 Total: 0.72 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.99 Total: -13.13 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.04 Total: -37.23 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.35 -7.96 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.728 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds