Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 H 1.09002 * 115.55067 * 330.58069 * 3 2 1 5 5 C 1.53005 * 117.49765 * 116.25082 * 3 2 1 6 6 C 1.52999 * 117.51737 * 184.88103 * 3 2 1 7 7 H 1.08995 * 117.49797 * 145.02727 * 6 3 2 8 8 N 1.46903 * 117.49875 * 0.02562 * 6 3 2 9 9 C 1.46902 * 110.99835 * 155.00128 * 8 6 3 10 10 C 1.52995 * 109.47042 * 180.02562 * 9 8 6 11 11 O 1.42904 * 109.47547 * 65.00089 * 10 9 8 12 12 C 1.42895 * 114.00301 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46794 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00550 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99539 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00393 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47210 * 119.99808 * 17 15 13 20 20 H 1.48504 * 109.46716 * 240.00196 * 17 15 13 21 21 H 1.09004 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47640 * 300.00486 * 1 2 3 23 23 H 1.09005 * 109.47079 * 60.00480 * 1 2 3 24 24 H 1.08995 * 109.47632 * 240.00117 * 2 1 3 25 25 H 1.09005 * 109.47079 * 119.99520 * 2 1 3 26 26 H 1.09004 * 117.49360 * 215.00124 * 5 3 2 27 27 H 1.08995 * 117.49694 * 359.97438 * 5 3 2 28 28 H 1.00899 * 110.99759 * 31.05168 * 8 6 3 29 29 H 1.09004 * 109.46971 * 300.00099 * 9 8 6 30 30 H 1.08995 * 109.47284 * 60.00403 * 9 8 6 31 31 H 1.09002 * 109.47297 * 184.99826 * 10 9 8 32 32 H 1.09004 * 109.47331 * 304.99732 * 10 9 8 33 33 H 1.08996 * 109.46993 * 299.99742 * 12 11 10 34 34 H 1.09001 * 109.47380 * 60.00124 * 12 11 10 35 35 H 0.96998 * 120.00420 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3890 2.1713 -0.4831 5 6 2.8414 1.9085 1.2172 6 6 3.5502 1.6584 -0.1155 7 1 3.8929 2.5291 -0.6744 8 7 4.4001 0.4646 -0.2184 9 6 5.6670 0.7770 -0.8932 10 6 6.5230 -0.4880 -0.9820 11 8 5.8734 -1.4448 -1.8216 12 6 6.5934 -2.6699 -1.9718 13 6 5.8204 -3.5996 -2.8714 14 1 4.8739 -3.2865 -3.2865 15 6 6.3218 -4.8502 -3.1644 16 7 7.4742 -5.2319 -2.6586 17 14 5.3640 -6.0025 -4.2801 18 1 4.1078 -5.3403 -4.7143 19 1 6.1861 -6.3350 -5.4712 20 1 5.0365 -7.2482 -3.5410 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.7176 2.9439 1.5349 27 1 3.0049 1.1875 2.0181 28 1 3.9152 -0.2849 -0.6887 29 1 5.4620 1.1478 -1.8975 30 1 6.2022 1.5391 -0.3267 31 1 7.4975 -0.2386 -1.4018 32 1 6.6538 -0.9090 0.0149 33 1 7.5695 -2.4661 -2.4119 34 1 6.7252 -3.1360 -0.9953 35 1 7.8270 -6.1115 -2.8650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385782081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -61.844987 kcal Electronic energy + Delta-G solvation = -14012.871590 eV Core-core repulsion = 11624.158203 eV Total energy + Delta-G solvation = -2388.713388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55692 -38.52228 -35.37219 -34.59515 -32.59449 -29.96258 -28.30725 -24.83934 -24.53089 -22.90197 -22.33252 -20.76713 -18.66168 -17.54822 -17.06893 -16.57661 -16.54009 -16.17538 -15.33618 -15.06925 -14.86150 -14.01174 -13.89175 -13.39448 -13.33487 -13.02900 -12.80043 -12.67940 -12.57869 -12.38174 -12.16467 -11.89828 -11.86120 -11.33731 -11.26079 -10.89946 -10.69310 -10.25041 -9.19840 -8.33252 -6.45840 1.39497 1.41032 1.55571 2.33848 2.88475 3.00692 3.09730 3.21135 3.81247 4.01986 4.16737 4.22146 4.35639 4.38614 4.49177 4.53437 4.59975 4.76798 4.80858 4.85313 4.91086 4.95940 5.06025 5.16959 5.20559 5.25116 5.29635 5.52040 5.53689 5.94316 6.15958 6.35493 6.51509 6.80007 7.26221 8.79419 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.006161 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.633673 B = 4543.490794 C = 5321.664306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.158 4.158 4 H 0.118 0.882 5 C -0.158 4.158 6 C 0.002 3.998 7 H 0.108 0.892 8 N -0.669 5.669 9 C 0.078 3.922 10 C 0.053 3.947 11 O -0.409 6.409 12 C 0.211 3.789 13 C -0.547 4.547 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.271 1.271 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.343 0.657 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.042 0.958 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 13.291 5.050 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.177 4.177 4 H 0.136 0.864 5 C -0.196 4.196 6 C -0.108 4.108 7 H 0.126 0.874 8 N -0.301 5.301 9 C -0.051 4.051 10 C -0.024 4.024 11 O -0.329 6.329 12 C 0.136 3.864 13 C -0.585 4.585 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.196 1.196 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.164 0.836 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.647 13.244 5.591 17.313 hybrid contribution 0.127 -0.763 -1.130 1.370 sum -9.521 12.481 4.460 16.319 Atomic orbital electron populations 1.21690 0.94068 1.01854 1.02290 1.21002 0.96976 0.94342 1.01133 1.22761 0.93175 0.98276 1.03492 0.86409 1.23273 1.02462 1.02494 0.91375 1.22591 0.91684 0.94437 1.02097 0.87388 1.60257 1.05488 1.08184 1.56128 1.21956 0.90746 0.95202 0.97243 1.22622 0.95823 0.90169 0.93807 1.87751 1.49161 1.26967 1.69036 1.19806 0.91184 0.81027 0.94424 1.21410 1.07070 0.99922 1.30103 0.91990 1.25973 0.96161 0.99356 0.97742 1.70076 1.20143 1.21261 1.45542 0.85129 0.78497 0.77767 0.77961 1.18797 1.19599 1.19650 0.92765 0.91799 0.92201 0.93411 0.92560 0.86981 0.89530 0.83614 0.94606 0.87669 0.93056 0.93975 0.99621 0.99796 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.87 71.98 0.71 -2.01 16 2 C -0.10 -2.32 5.29 30.59 0.16 -2.15 16 3 C -0.16 -3.38 5.73 -10.79 -0.06 -3.44 16 4 H 0.12 2.12 8.08 -2.39 -0.02 2.10 16 5 C -0.16 -3.26 10.11 30.60 0.31 -2.95 16 6 C 0.00 0.05 6.24 44.92 0.28 0.33 16 7 H 0.11 2.31 7.90 -2.39 -0.02 2.29 16 8 N -0.67 -20.53 6.56 -491.56 -3.23 -23.76 16 9 C 0.08 2.35 5.96 86.30 0.51 2.86 16 10 C 0.05 2.03 6.28 71.98 0.45 2.48 16 11 O -0.41 -20.22 9.85 -148.98 -1.47 -21.69 16 12 C 0.21 12.07 5.69 71.24 0.41 12.48 16 13 C -0.55 -32.99 9.43 25.60 0.24 -32.75 16 14 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 17 Si 0.98 44.65 29.54 68.60 2.03 46.68 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.05 1.33 7.33 -2.39 -0.02 1.31 16 25 H 0.06 1.47 7.88 -2.38 -0.02 1.45 16 26 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 28 H 0.34 12.06 6.62 -89.69 -0.59 11.47 16 29 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -65.08 293.99 1.54 -63.54 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.45 Total: 15.80 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 3.48 Total: -24.33 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.94 Total: -80.00 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.47 Total: -21.69 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -65.08 1.54 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.699 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds