Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 H 1.09003 * 115.54979 * 29.32534 * 3 2 1 5 5 C 1.53072 * 117.51559 * 243.60882 * 3 2 1 6 6 C 1.52999 * 59.98479 * 252.51878 * 5 3 2 7 7 H 1.08994 * 117.49875 * 252.49637 * 6 5 3 8 8 N 1.46906 * 117.49815 * 107.49787 * 6 5 3 9 9 C 1.46901 * 110.99793 * 136.25586 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 O 1.42899 * 109.47405 * 64.99669 * 10 9 8 12 12 C 1.42901 * 113.99649 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46545 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00589 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99649 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00005 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47098 * 89.99698 * 17 15 13 19 19 H 1.48497 * 109.47124 * 210.00019 * 17 15 13 20 20 H 1.48503 * 109.46816 * 329.99950 * 17 15 13 21 21 H 1.09003 * 109.47460 * 299.99921 * 1 2 3 22 22 H 1.08997 * 109.46729 * 60.00042 * 1 2 3 23 23 H 1.09004 * 109.47357 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47267 * 239.99501 * 2 1 3 25 25 H 1.09005 * 109.47082 * 120.00045 * 2 1 3 26 26 H 1.09000 * 117.49951 * 145.03455 * 5 3 2 27 27 H 1.09007 * 117.51034 * 359.97438 * 5 3 2 28 28 H 1.00899 * 110.99995 * 12.29984 * 8 6 5 29 29 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 30 30 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 31 31 H 1.09002 * 109.46642 * 184.99944 * 10 9 8 32 32 H 1.09002 * 109.47069 * 304.99474 * 10 9 8 33 33 H 1.08990 * 109.47463 * 299.99806 * 12 11 10 34 34 H 1.08992 * 109.47069 * 60.00902 * 12 11 10 35 35 H 0.97004 * 119.99079 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5501 1.6579 0.1183 7 1 3.8920 2.5286 0.6778 8 7 4.3995 0.4638 0.2232 9 6 5.6660 0.7764 0.8985 10 6 6.5219 -0.4887 0.9882 11 8 6.8886 -0.9099 -0.3271 12 6 7.6943 -2.0898 -0.3560 13 6 8.0195 -2.4410 -1.7850 14 1 7.6484 -1.8247 -2.5905 15 6 8.7908 -3.5493 -2.0641 16 7 9.0750 -3.8556 -3.3111 17 14 9.4321 -4.6158 -0.6710 18 1 8.4461 -5.6852 -0.3719 19 1 10.7229 -5.2307 -1.0721 20 1 9.6372 -3.7792 0.5387 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.7221 2.9433 -1.5343 27 1 3.0111 1.1864 -2.0160 28 1 4.5648 0.0568 -0.6851 29 1 5.4605 1.1484 1.9023 30 1 6.2018 1.5377 0.3315 31 1 7.4216 -0.2783 1.5665 32 1 5.9521 -1.2789 1.4772 33 1 8.6183 -1.9123 0.1942 34 1 7.1492 -2.9133 0.1051 35 1 9.6173 -4.6355 -3.5074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385782082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -36.896626 kcal Electronic energy + Delta-G solvation = -13968.890315 eV Core-core repulsion = 11581.258770 eV Total energy + Delta-G solvation = -2387.631545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.47202 -36.97977 -33.99956 -32.58250 -31.56695 -28.57862 -26.88661 -23.81122 -21.94627 -21.63838 -21.56755 -19.74962 -16.88479 -15.98634 -15.84774 -15.22777 -14.85990 -14.42244 -14.18174 -13.91017 -13.10489 -12.98625 -12.41472 -12.27103 -12.06632 -11.92435 -11.56317 -11.31043 -11.03254 -10.90303 -10.75061 -10.65754 -10.35818 -9.86974 -9.72686 -9.19641 -8.86178 -8.48027 -8.02737 -6.12492 -4.11596 3.24896 3.31739 3.33261 3.82613 4.24395 4.35142 4.68111 4.75373 4.93957 5.13119 5.19256 5.26508 5.37111 5.44386 5.51464 5.65413 5.67490 5.77088 5.89801 5.96162 6.03828 6.09081 6.13793 6.22774 6.27351 6.51099 6.60915 6.99693 7.22631 7.56852 7.61208 8.00021 8.65203 8.98070 9.46874 11.00536 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.005479 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.002686 B = 5109.101092 C = 5297.197262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.142 4.142 4 H 0.099 0.901 5 C -0.206 4.206 6 C 0.027 3.973 7 H 0.104 0.896 8 N -0.654 5.654 9 C 0.067 3.933 10 C 0.057 3.943 11 O -0.385 6.385 12 C 0.171 3.829 13 C -0.520 4.520 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.358 0.642 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 9.481 9.006 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.162 4.162 4 H 0.117 0.883 5 C -0.244 4.244 6 C -0.085 4.085 7 H 0.122 0.878 8 N -0.286 5.286 9 C -0.062 4.062 10 C -0.021 4.021 11 O -0.304 6.304 12 C 0.096 3.904 13 C -0.557 4.557 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.179 0.821 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.362 9.188 9.291 17.988 hybrid contribution 0.950 -0.247 0.164 0.995 sum -11.412 8.941 9.454 17.308 Atomic orbital electron populations 1.21783 0.96414 1.01273 1.01224 1.20925 0.94431 0.94039 1.02864 1.22627 0.93800 0.98256 1.01507 0.88311 1.23602 1.06316 1.02137 0.92383 1.22476 0.92758 0.93885 0.99337 0.87830 1.60189 1.15634 1.25256 1.27488 1.21977 0.88998 0.96416 0.98778 1.22392 0.96477 0.95812 0.87416 1.87846 1.71660 1.46358 1.24519 1.20576 0.88758 0.82444 0.98650 1.20891 1.32455 1.11514 0.90883 0.90049 1.24768 0.95567 0.96963 0.95649 1.69882 1.38387 1.27305 1.17831 0.86839 0.78895 0.81111 0.82831 1.19882 1.20792 1.19125 0.93156 0.93084 0.92938 0.91891 0.90948 0.89188 0.88462 0.82059 0.90471 0.94412 0.93903 0.93378 0.98023 0.98277 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.87 37.16 0.37 -1.09 16 2 C -0.09 -0.99 5.67 -26.73 -0.15 -1.14 16 3 C -0.14 -1.59 5.74 -90.59 -0.52 -2.11 16 4 H 0.10 0.98 8.07 -51.93 -0.42 0.56 16 5 C -0.21 -2.37 9.88 -26.69 -0.26 -2.64 16 6 C 0.03 0.33 6.29 -67.71 -0.43 -0.10 16 7 H 0.10 1.16 7.90 -51.93 -0.41 0.75 16 8 N -0.65 -9.65 6.15 -106.72 -0.66 -10.31 16 9 C 0.07 0.99 5.96 -3.82 -0.02 0.96 16 10 C 0.06 1.00 6.28 37.16 0.23 1.23 16 11 O -0.38 -8.86 9.85 -35.23 -0.35 -9.20 16 12 C 0.17 4.36 4.76 36.01 0.17 4.53 16 13 C -0.52 -15.48 9.99 -34.44 -0.34 -15.83 16 14 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.07 2.13 5.47 -17.81 -0.10 2.04 16 16 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 17 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.22 7.98 -51.93 -0.41 0.80 16 28 H 0.36 5.98 8.07 -39.29 -0.32 5.66 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 34 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -30.65 292.39 -7.68 -38.32 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.13 Total: 1.02 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.05 Total: -14.14 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.12 Total: -37.23 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.35 Total: -9.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.65 -7.68 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.428 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds