Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47237 * 2 1 4 4 H 1.09003 * 115.54979 * 29.32534 * 3 2 1 5 5 C 1.53072 * 117.51559 * 243.60882 * 3 2 1 6 6 C 1.52999 * 59.98479 * 252.51878 * 5 3 2 7 7 H 1.08994 * 117.49875 * 252.49637 * 6 5 3 8 8 N 1.46906 * 117.49815 * 107.49787 * 6 5 3 9 9 C 1.46901 * 110.99793 * 136.25586 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 O 1.42899 * 109.47405 * 64.99669 * 10 9 8 12 12 C 1.42901 * 113.99649 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46545 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00589 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99649 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00005 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47098 * 89.99698 * 17 15 13 19 19 H 1.48497 * 109.47124 * 210.00019 * 17 15 13 20 20 H 1.48503 * 109.46816 * 329.99950 * 17 15 13 21 21 H 1.09003 * 109.47460 * 299.99921 * 1 2 3 22 22 H 1.08997 * 109.46729 * 60.00042 * 1 2 3 23 23 H 1.09004 * 109.47357 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47267 * 239.99501 * 2 1 3 25 25 H 1.09005 * 109.47082 * 120.00045 * 2 1 3 26 26 H 1.09000 * 117.49951 * 145.03455 * 5 3 2 27 27 H 1.09007 * 117.51034 * 359.97438 * 5 3 2 28 28 H 1.00899 * 110.99995 * 12.29984 * 8 6 5 29 29 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 30 30 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 31 31 H 1.09002 * 109.46642 * 184.99944 * 10 9 8 32 32 H 1.09002 * 109.47069 * 304.99474 * 10 9 8 33 33 H 1.08990 * 109.47463 * 299.99806 * 12 11 10 34 34 H 1.08992 * 109.47069 * 60.00902 * 12 11 10 35 35 H 0.97004 * 119.99079 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5501 1.6579 0.1183 7 1 3.8920 2.5286 0.6778 8 7 4.3995 0.4638 0.2232 9 6 5.6660 0.7764 0.8985 10 6 6.5219 -0.4887 0.9882 11 8 6.8886 -0.9099 -0.3271 12 6 7.6943 -2.0898 -0.3560 13 6 8.0195 -2.4410 -1.7850 14 1 7.6484 -1.8247 -2.5905 15 6 8.7908 -3.5493 -2.0641 16 7 9.0750 -3.8556 -3.3111 17 14 9.4321 -4.6158 -0.6710 18 1 8.4461 -5.6852 -0.3719 19 1 10.7229 -5.2307 -1.0721 20 1 9.6372 -3.7792 0.5387 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.7221 2.9433 -1.5343 27 1 3.0111 1.1864 -2.0160 28 1 4.5648 0.0568 -0.6851 29 1 5.4605 1.1484 1.9023 30 1 6.2018 1.5377 0.3315 31 1 7.4216 -0.2783 1.5665 32 1 5.9521 -1.2789 1.4772 33 1 8.6183 -1.9123 0.1942 34 1 7.1492 -2.9133 0.1051 35 1 9.6173 -4.6355 -3.5074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385782082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -57.758220 kcal Electronic energy + Delta-G solvation = -13969.794942 eV Core-core repulsion = 11581.258770 eV Total energy + Delta-G solvation = -2388.536172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53562 -38.57336 -35.35210 -34.62367 -32.55573 -30.42644 -28.44374 -24.67016 -24.01640 -22.90804 -22.61188 -20.68935 -19.06976 -17.52439 -17.14710 -16.58639 -16.27204 -16.11919 -15.30076 -15.09035 -14.77089 -14.36771 -14.03174 -13.47134 -13.25875 -13.04784 -12.97194 -12.75428 -12.51866 -12.30446 -12.00553 -11.84447 -11.77415 -11.45155 -11.31949 -10.93598 -10.68863 -10.36471 -9.11510 -8.38454 -6.46453 1.33203 1.36079 1.46909 2.28781 2.83408 2.94484 3.10596 3.20321 3.85794 3.95645 4.15469 4.23288 4.37008 4.42629 4.47514 4.54671 4.59232 4.68113 4.79772 4.81552 4.89914 4.93743 5.00095 5.05627 5.24706 5.25982 5.36974 5.42631 5.59979 5.91980 6.16396 6.32398 6.57394 6.72927 7.18194 8.78675 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037676 B = 0.005479 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.002686 B = 5109.101092 C = 5297.197262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.133 4.133 4 H 0.120 0.880 5 C -0.207 4.207 6 C 0.014 3.986 7 H 0.121 0.879 8 N -0.663 5.663 9 C 0.074 3.926 10 C 0.049 3.951 11 O -0.408 6.408 12 C 0.181 3.819 13 C -0.546 4.546 14 H 0.030 0.970 15 C 0.014 3.986 16 N -0.942 5.942 17 Si 0.956 3.044 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.245 1.245 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.341 0.659 29 H 0.109 0.891 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 9.748 11.549 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.152 4.152 4 H 0.138 0.862 5 C -0.246 4.246 6 C -0.096 4.096 7 H 0.139 0.861 8 N -0.293 5.293 9 C -0.055 4.055 10 C -0.028 4.028 11 O -0.327 6.327 12 C 0.106 3.894 13 C -0.584 4.584 14 H 0.048 0.952 15 C -0.184 4.184 16 N -0.582 5.582 17 Si 0.777 3.223 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.169 1.169 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.160 0.840 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.027 0.973 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.772 9.488 11.848 19.837 hybrid contribution 1.010 -0.253 -0.705 1.257 sum -11.762 9.234 11.143 18.649 Atomic orbital electron populations 1.21744 0.94717 1.01713 1.02054 1.20896 0.95937 0.94209 1.01277 1.22701 0.93292 0.98265 1.00946 0.86190 1.23604 1.06371 1.02697 0.91881 1.22643 0.93108 0.93638 1.00232 0.86102 1.60244 1.15921 1.26702 1.26473 1.22002 0.88475 0.94682 1.00367 1.22723 0.97792 0.97149 0.85092 1.87812 1.71382 1.45390 1.28160 1.20285 0.89660 0.83787 0.95690 1.21168 1.33326 1.11719 0.92181 0.95191 1.25839 0.95322 0.98332 0.98949 1.70037 1.39167 1.28277 1.20683 0.85600 0.78532 0.78993 0.79163 1.18470 1.19778 1.16886 0.91857 0.92644 0.92789 0.93903 0.92138 0.87443 0.90194 0.83979 0.87302 0.94931 0.92167 0.92970 0.96995 0.97282 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.87 71.98 0.71 -1.89 16 2 C -0.09 -1.94 5.67 30.59 0.17 -1.76 16 3 C -0.13 -2.75 5.74 -10.77 -0.06 -2.81 16 4 H 0.12 2.01 8.07 -2.39 -0.02 1.99 16 5 C -0.21 -4.60 9.88 30.62 0.30 -4.30 16 6 C 0.01 0.33 6.29 44.91 0.28 0.62 16 7 H 0.12 2.39 7.90 -2.39 -0.02 2.37 16 8 N -0.66 -19.19 6.15 -491.56 -3.02 -22.21 16 9 C 0.07 2.03 5.96 86.30 0.51 2.55 16 10 C 0.05 1.66 6.28 71.98 0.45 2.11 16 11 O -0.41 -18.84 9.85 -148.98 -1.47 -20.31 16 12 C 0.18 9.18 4.76 71.24 0.34 9.51 16 13 C -0.55 -33.52 9.99 25.60 0.26 -33.27 16 14 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 15 C 0.01 0.81 5.47 84.66 0.46 1.27 16 16 N -0.94 -59.63 13.96 21.45 0.30 -59.34 16 17 Si 0.96 43.60 27.47 68.60 1.88 45.48 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.04 1.12 7.88 -2.39 -0.02 1.10 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.06 7.98 -2.38 -0.02 2.04 16 28 H 0.34 11.72 8.07 -89.69 -0.72 11.00 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 34 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 35 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -67.59 292.39 1.38 -66.21 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.26 Total: 18.14 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.43 Total: -27.97 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.72 Total: -81.55 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.47 Total: -20.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -67.59 1.38 -66.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385782082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.451 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds