Wall clock time and date at job start Mon Mar 30 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47449 * 2 1 4 4 H 1.08996 * 109.89862 * 305.93335 * 3 2 1 5 5 C 1.54378 * 109.83021 * 184.99777 * 3 2 1 6 6 C 1.55306 * 102.25626 * 219.13191 * 5 3 2 7 7 H 1.09006 * 111.12149 * 276.17454 * 6 5 3 8 8 N 1.46897 * 111.12925 * 152.05290 * 6 5 3 9 9 C 1.46893 * 111.00101 * 158.49661 * 8 6 5 10 10 C 1.53004 * 109.47282 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47208 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00083 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46986 * 270.00126 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00143 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99973 * 15 13 11 19 19 C 1.54947 * 100.97977 * 34.11102 * 6 5 3 20 20 O 1.43239 * 109.82949 * 66.86657 * 3 2 1 21 21 H 1.08993 * 109.47182 * 300.00194 * 1 2 3 22 22 H 1.09006 * 109.46839 * 59.99687 * 1 2 3 23 23 H 1.08993 * 109.47524 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46886 * 239.99250 * 2 1 3 25 25 H 1.09006 * 109.46839 * 120.00313 * 2 1 3 26 26 H 1.09002 * 110.84870 * 100.94077 * 5 3 2 27 27 H 1.09005 * 111.02751 * 337.40269 * 5 3 2 28 28 H 1.00894 * 110.99960 * 282.45044 * 8 6 5 29 29 H 1.09000 * 109.47487 * 59.99913 * 9 8 6 30 30 H 1.08998 * 109.47524 * 299.99953 * 9 8 6 31 31 H 1.08994 * 109.47074 * 60.00280 * 10 9 8 32 32 H 1.08998 * 109.47285 * 300.00116 * 10 9 8 33 33 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 34 34 H 1.09004 * 110.30802 * 82.49542 * 19 6 5 35 35 H 1.08999 * 110.31155 * 204.66306 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5967 1.9927 -0.8298 5 6 3.5786 1.4538 -0.1265 6 6 3.9800 2.6052 0.8354 7 1 3.9085 3.5737 0.3403 8 7 5.3263 2.3924 1.3833 9 6 5.9077 3.6556 1.8566 10 6 7.3062 3.3941 2.4194 11 6 7.9030 4.6901 2.9045 12 1 7.3407 5.6084 2.8202 13 6 9.1666 4.7036 3.4558 14 7 9.8514 3.5855 3.5580 15 14 9.9060 6.3100 4.0577 16 1 10.6528 6.9572 2.9492 17 1 8.8205 7.2132 4.5169 18 1 10.8326 6.0366 5.1855 19 6 2.8996 2.4599 1.9366 20 8 1.7030 2.0770 1.2391 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.8821 1.6790 -1.1489 27 1 4.0052 0.5065 0.2031 28 1 5.3122 1.7026 2.1194 29 1 5.2749 4.0766 2.6380 30 1 5.9754 4.3582 1.0261 31 1 7.9392 2.9730 1.6384 32 1 7.2382 2.6917 3.2501 33 1 9.4673 2.7513 3.2457 34 1 3.1864 1.6857 2.6482 35 1 2.7518 3.4103 2.4494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594942592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:22 Heat of formation + Delta-G solvation = -73.459546 kcal Electronic energy + Delta-G solvation = -14178.397858 eV Core-core repulsion = 11789.180826 eV Total energy + Delta-G solvation = -2389.217033 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73950 -35.91184 -33.64243 -33.28861 -30.96506 -28.70617 -26.97162 -23.88610 -23.44740 -21.28417 -20.87190 -20.55375 -17.05466 -16.77447 -15.87258 -15.12876 -14.65164 -13.95791 -13.78488 -13.64572 -13.55708 -13.33220 -12.82481 -12.36804 -11.89876 -11.77624 -11.72968 -11.31537 -11.06272 -11.00830 -10.83492 -10.62936 -10.22173 -10.13757 -9.77258 -9.53787 -8.60471 -8.33941 -8.00315 -6.37538 -4.06780 3.43243 3.46839 3.62518 3.73291 4.43808 4.56326 4.59320 4.84080 4.87918 5.00741 5.10649 5.17308 5.31176 5.40535 5.47682 5.67357 5.70134 5.78190 5.80335 5.92895 5.97658 6.12784 6.14909 6.19146 6.23560 6.75669 6.97571 7.19670 7.44146 7.59245 7.74115 8.21291 8.45090 8.87309 9.65881 11.03699 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.088276 B = 0.004716 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.111490 B = 5935.346720 C = 6067.359113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.078 3.922 4 H 0.078 0.922 5 C -0.141 4.141 6 C 0.056 3.944 7 H 0.091 0.909 8 N -0.678 5.678 9 C 0.071 3.929 10 C 0.011 3.989 11 C -0.604 4.604 12 H 0.048 0.952 13 C 0.015 3.985 14 N -0.912 5.912 15 Si 1.072 2.928 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.284 1.284 19 C 0.022 3.978 20 O -0.378 6.378 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.338 0.662 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.005 0.995 33 H 0.270 0.730 34 H 0.059 0.941 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.469 -5.152 -6.574 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.020 3.980 4 H 0.095 0.905 5 C -0.180 4.180 6 C -0.056 4.056 7 H 0.110 0.890 8 N -0.308 5.308 9 C -0.057 4.057 10 C -0.026 4.026 11 C -0.643 4.643 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.548 5.548 15 Si 0.901 3.099 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.057 4.057 20 O -0.297 6.297 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.157 0.843 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.017 -4.420 -6.412 16.035 hybrid contribution -1.676 -0.558 0.036 1.767 sum -15.693 -4.978 -6.376 17.655 Atomic orbital electron populations 1.21703 0.95508 1.01199 1.02147 1.21904 0.96702 0.96072 1.02391 1.22793 0.94643 0.93315 0.87284 0.90455 1.23145 0.93792 0.99997 1.01022 1.23274 0.88497 0.99054 0.94743 0.89050 1.60577 1.18059 1.12314 1.39895 1.22082 0.97287 0.88843 0.97450 1.19210 0.90705 0.97471 0.95225 1.22008 1.03680 0.94007 1.44591 0.93332 1.25852 0.94269 1.03856 0.94879 1.70745 1.39952 0.99533 1.44618 0.83497 0.75611 0.74068 0.76749 1.21408 1.21519 1.20970 1.24191 0.85792 1.00054 0.95619 1.88402 1.29620 1.78445 1.33213 0.92118 0.92983 0.93058 0.91106 0.91555 0.89955 0.90043 0.84323 0.96217 0.91992 0.96489 0.97680 0.91979 0.92319 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.83 37.16 0.37 -1.01 16 2 C -0.13 -1.32 5.51 -26.73 -0.15 -1.47 16 3 C 0.08 0.89 3.51 -26.01 -0.09 0.80 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.14 -1.72 6.24 -24.79 -0.15 -1.87 16 6 C 0.06 0.81 3.39 -65.46 -0.22 0.58 16 7 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 8 N -0.68 -11.75 6.40 -104.36 -0.67 -12.42 16 9 C 0.07 1.49 5.51 -3.83 -0.02 1.47 16 10 C 0.01 0.29 4.54 -27.88 -0.13 0.16 16 11 C -0.60 -17.37 9.11 -34.44 -0.31 -17.68 16 12 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 13 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 14 N -0.91 -28.21 13.65 55.43 0.76 -27.45 16 15 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.02 0.30 7.41 38.18 0.28 0.59 16 20 O -0.38 -5.26 10.65 -35.23 -0.38 -5.64 16 21 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 28 H 0.34 5.64 8.24 -39.30 -0.32 5.32 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 31 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 32 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 33 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 34 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -30.59 286.27 -7.67 -38.25 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.08 Total: 0.63 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.53 Total: -18.08 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.09 Total: -39.87 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.59 -7.67 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594942592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.206 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds