Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99945 * 2 1 4 4 C 1.52998 * 109.47123 * 60.00132 * 3 2 1 5 5 C 1.52997 * 109.46979 * 299.99980 * 3 2 1 6 6 C 1.53006 * 109.47027 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47115 * 64.99596 * 6 3 2 8 8 C 1.36938 * 120.00465 * 269.99935 * 7 6 3 9 9 H 1.07995 * 120.00255 * 140.51246 * 8 7 6 10 10 C 1.38806 * 119.99439 * 320.51732 * 8 7 6 11 11 N 1.31612 * 120.00673 * 340.44126 * 10 8 7 12 12 Si 1.86808 * 119.99619 * 160.44829 * 10 8 7 13 13 H 1.48495 * 109.46985 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47415 * 119.99834 * 12 10 8 15 15 H 1.48507 * 109.46794 * 239.99566 * 12 10 8 16 16 C 1.46503 * 119.99489 * 90.00201 * 7 6 3 17 17 C 1.53000 * 117.49528 * 183.23018 * 16 7 6 18 18 C 1.53004 * 117.49873 * 114.60773 * 16 7 6 19 19 H 1.09000 * 109.46858 * 299.99980 * 1 2 3 20 20 H 1.08992 * 109.47432 * 60.00135 * 1 2 3 21 21 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47126 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.47147 * 300.00372 * 4 3 2 24 24 H 1.09003 * 109.47110 * 59.99957 * 4 3 2 25 25 H 1.09001 * 109.47506 * 300.00467 * 5 3 2 26 26 H 1.09010 * 109.46967 * 60.00141 * 5 3 2 27 27 H 1.09001 * 109.47236 * 179.97438 * 5 3 2 28 28 H 1.09004 * 109.46590 * 304.99941 * 6 3 2 29 29 H 1.08994 * 109.46641 * 185.00049 * 6 3 2 30 30 H 0.97000 * 120.00354 * 175.02781 * 11 10 8 31 31 H 1.08997 * 115.55294 * 328.93038 * 16 7 6 32 32 H 1.09002 * 117.50353 * 359.97438 * 17 16 7 33 33 H 1.09002 * 117.50068 * 145.02678 * 17 16 7 34 34 H 1.08996 * 117.49504 * 214.97664 * 18 16 7 35 35 H 1.09000 * 117.49806 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2527 8 6 4.0968 -0.7970 -1.3368 9 1 3.7925 -1.3117 -2.2362 10 6 4.6106 -1.5155 -0.2661 11 7 5.3260 -0.9041 0.6541 12 14 4.2870 -3.3504 -0.1312 13 1 3.4622 -3.7935 -1.2839 14 1 5.5789 -4.0826 -0.1358 15 1 3.5620 -3.6334 1.1336 16 6 4.2864 1.4007 -2.4147 17 6 4.6677 0.6899 -3.7149 18 6 5.7367 1.4228 -2.9017 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 2.0025 3.0604 1.2495 23 1 0.4722 2.1508 1.2493 24 1 1.8804 1.5238 2.1392 25 1 1.8803 1.5238 -2.1393 26 1 0.4721 2.1508 -1.2492 27 1 2.0017 3.0607 -1.2490 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 5.6241 -1.3900 1.4389 31 1 3.7143 2.3249 -2.4953 32 1 4.6878 -0.3999 -3.7055 33 1 4.3465 1.1465 -4.6510 34 1 6.1186 2.3615 -3.3029 35 1 6.4597 0.8154 -2.3572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687713184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = 3.672346 kcal Electronic energy + Delta-G solvation = -15593.016380 eV Core-core repulsion = 13207.144038 eV Total energy + Delta-G solvation = -2385.872343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.36690 -36.53644 -33.42341 -32.03462 -29.81153 -26.86782 -26.52059 -25.14973 -23.23201 -21.27797 -19.69305 -19.12092 -16.37943 -15.73896 -14.85211 -14.80034 -14.37156 -14.31363 -13.70502 -12.98271 -12.69511 -12.19181 -11.88589 -11.67980 -11.44126 -11.42375 -10.88693 -10.70528 -10.64606 -10.55513 -10.35970 -10.14081 -9.88184 -9.47066 -9.39956 -9.16414 -8.69027 -8.29801 -6.37963 -5.61842 -3.26201 3.46873 3.54454 3.58235 4.58512 4.66882 5.03371 5.29076 5.48546 5.58533 5.73237 5.82365 5.92116 5.93388 5.98787 6.03687 6.11988 6.21785 6.24841 6.30315 6.36963 6.55387 6.56850 6.69649 6.79926 6.91243 6.97504 7.14587 7.31921 7.69691 7.95529 8.20627 8.66932 9.30223 9.92804 10.49014 11.34176 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.016568 C = 0.011387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.616354 B = 1689.563282 C = 2458.413496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.343 6.343 3 C 0.090 3.910 4 C -0.174 4.174 5 C -0.169 4.169 6 C 0.163 3.837 7 N -0.542 5.542 8 C -0.235 4.235 9 H 0.059 0.941 10 C 0.018 3.982 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.294 1.294 15 H -0.289 1.289 16 C 0.119 3.881 17 C -0.196 4.196 18 C -0.224 4.224 19 H 0.029 0.971 20 H 0.032 0.968 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.251 0.749 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 5.589 -1.603 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C 0.048 3.952 4 C -0.233 4.233 5 C -0.227 4.227 6 C 0.036 3.964 7 N -0.258 5.258 8 C -0.365 4.365 9 H 0.077 0.923 10 C -0.181 4.181 11 N -0.534 5.534 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.215 1.215 16 C 0.010 3.990 17 C -0.235 4.235 18 C -0.265 4.265 19 H 0.048 0.952 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.525 5.324 -1.467 8.549 hybrid contribution -0.439 -0.679 0.139 0.820 sum -6.964 4.645 -1.328 8.476 Atomic orbital electron populations 1.22662 0.84850 1.01243 0.98655 1.88304 1.16292 1.26986 1.94498 1.22504 0.98330 0.82611 0.91764 1.22385 1.00347 1.00678 0.99848 1.22423 0.99323 1.00028 1.00897 1.20924 0.86246 0.96636 0.92547 1.43224 1.73327 1.02227 1.06977 1.18868 1.34094 0.81481 1.02063 0.92334 1.25089 0.95844 0.97642 0.99538 1.70037 1.35371 1.36469 1.11475 0.86353 0.77169 0.86100 0.77813 1.20207 1.22168 1.21531 1.21349 0.93625 0.94864 0.89170 1.23004 1.05603 1.00533 0.94319 1.23366 0.96119 1.00757 1.06245 0.95248 0.94945 0.90996 0.92337 0.93413 0.92115 0.90612 0.94272 0.93016 0.88083 0.94207 0.93907 0.89554 0.88470 0.91031 0.91477 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.21 101.05 1.03 1.42 16 2 O -0.34 -7.52 9.82 -35.23 -0.35 -7.87 16 3 C 0.09 1.78 0.91 -90.62 -0.08 1.70 16 4 C -0.17 -2.90 8.25 37.16 0.31 -2.59 16 5 C -0.17 -2.97 6.96 37.16 0.26 -2.71 16 6 C 0.16 3.79 4.63 -4.04 -0.02 3.77 16 7 N -0.54 -13.34 2.33 -165.66 -0.39 -13.73 16 8 C -0.24 -6.43 7.98 -15.06 -0.12 -6.55 16 9 H 0.06 1.64 6.75 -52.49 -0.35 1.29 16 10 C 0.02 0.52 4.98 -17.44 -0.09 0.43 16 11 N -0.89 -25.86 11.49 55.49 0.64 -25.22 16 12 Si 0.90 22.48 29.60 -169.99 -5.03 17.45 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 C 0.12 2.56 5.13 -67.93 -0.35 2.21 16 17 C -0.20 -3.98 9.80 -26.73 -0.26 -4.24 16 18 C -0.22 -4.67 10.36 -26.73 -0.28 -4.95 16 19 H 0.03 0.44 6.42 -51.93 -0.33 0.11 16 20 H 0.03 0.51 6.42 -51.93 -0.33 0.17 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.47 6.12 -51.93 -0.32 1.16 16 26 H 0.04 0.61 6.54 -51.92 -0.34 0.27 16 27 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 28 H 0.10 2.71 5.59 -51.93 -0.29 2.42 16 29 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.25 7.07 8.32 -40.82 -0.34 6.73 16 31 H 0.09 1.67 6.56 -51.93 -0.34 1.33 16 32 H 0.10 2.16 6.46 -51.93 -0.34 1.83 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -29.32 274.35 -6.08 -35.40 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.49 Total: 1.34 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 0.40 Total: -11.51 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.25 Total: -38.95 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.35 Total: -7.87 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.32 -6.08 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.073 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds