Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99945 * 2 1 4 4 C 1.52998 * 109.47123 * 60.00132 * 3 2 1 5 5 C 1.52997 * 109.46979 * 299.99980 * 3 2 1 6 6 C 1.53006 * 109.47027 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47115 * 64.99596 * 6 3 2 8 8 C 1.36938 * 120.00465 * 269.99935 * 7 6 3 9 9 H 1.07995 * 120.00255 * 140.51246 * 8 7 6 10 10 C 1.38806 * 119.99439 * 320.51732 * 8 7 6 11 11 N 1.31612 * 120.00673 * 340.44126 * 10 8 7 12 12 Si 1.86808 * 119.99619 * 160.44829 * 10 8 7 13 13 H 1.48495 * 109.46985 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47415 * 119.99834 * 12 10 8 15 15 H 1.48507 * 109.46794 * 239.99566 * 12 10 8 16 16 C 1.46503 * 119.99489 * 90.00201 * 7 6 3 17 17 C 1.53000 * 117.49528 * 183.23018 * 16 7 6 18 18 C 1.53004 * 117.49873 * 114.60773 * 16 7 6 19 19 H 1.09000 * 109.46858 * 299.99980 * 1 2 3 20 20 H 1.08992 * 109.47432 * 60.00135 * 1 2 3 21 21 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47126 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.47147 * 300.00372 * 4 3 2 24 24 H 1.09003 * 109.47110 * 59.99957 * 4 3 2 25 25 H 1.09001 * 109.47506 * 300.00467 * 5 3 2 26 26 H 1.09010 * 109.46967 * 60.00141 * 5 3 2 27 27 H 1.09001 * 109.47236 * 179.97438 * 5 3 2 28 28 H 1.09004 * 109.46590 * 304.99941 * 6 3 2 29 29 H 1.08994 * 109.46641 * 185.00049 * 6 3 2 30 30 H 0.97000 * 120.00354 * 175.02781 * 11 10 8 31 31 H 1.08997 * 115.55294 * 328.93038 * 16 7 6 32 32 H 1.09002 * 117.50353 * 359.97438 * 17 16 7 33 33 H 1.09002 * 117.50068 * 145.02678 * 17 16 7 34 34 H 1.08996 * 117.49504 * 214.97664 * 18 16 7 35 35 H 1.09000 * 117.49806 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1847 -0.0006 7 7 3.9757 0.5644 -1.2527 8 6 4.0968 -0.7970 -1.3368 9 1 3.7925 -1.3117 -2.2362 10 6 4.6106 -1.5155 -0.2661 11 7 5.3260 -0.9041 0.6541 12 14 4.2870 -3.3504 -0.1312 13 1 3.4622 -3.7935 -1.2839 14 1 5.5789 -4.0826 -0.1358 15 1 3.5620 -3.6334 1.1336 16 6 4.2864 1.4007 -2.4147 17 6 4.6677 0.6899 -3.7149 18 6 5.7367 1.4228 -2.9017 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 2.0025 3.0604 1.2495 23 1 0.4722 2.1508 1.2493 24 1 1.8804 1.5238 2.1392 25 1 1.8803 1.5238 -2.1393 26 1 0.4721 2.1508 -1.2492 27 1 2.0017 3.0607 -1.2490 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 5.6241 -1.3900 1.4389 31 1 3.7143 2.3249 -2.4953 32 1 4.6878 -0.3999 -3.7055 33 1 4.3465 1.1465 -4.6510 34 1 6.1186 2.3615 -3.3029 35 1 6.4597 0.8154 -2.3572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -14.006862 kcal Electronic energy + Delta-G solvation = -15593.783008 eV Core-core repulsion = 13207.144038 eV Total energy + Delta-G solvation = -2386.638971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94221 -38.23055 -35.22773 -33.78163 -31.65289 -28.24312 -28.00364 -26.96182 -25.02323 -22.94349 -21.52669 -20.63503 -18.30169 -17.44775 -16.62672 -16.41667 -16.02973 -15.78959 -15.60323 -14.57024 -14.16069 -13.86252 -13.51886 -13.22262 -13.12631 -12.78816 -12.70426 -12.59934 -12.34572 -12.17459 -12.00462 -11.88173 -11.76102 -11.26672 -11.06250 -10.80511 -10.37642 -10.15146 -8.38712 -7.67364 -5.36686 1.43708 1.47333 1.56128 2.56062 3.20352 3.25970 3.51381 3.57557 4.16740 4.32669 4.34879 4.41223 4.54880 4.59196 4.62164 4.64245 4.77840 4.81336 4.91182 4.97430 4.98813 5.04850 5.10334 5.24198 5.36864 5.42350 5.56734 5.60177 5.76324 5.84479 6.54382 6.80446 7.27427 7.96033 8.45818 9.21634 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.016568 C = 0.011387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.616354 B = 1689.563282 C = 2458.413496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.388 6.388 3 C 0.089 3.911 4 C -0.167 4.167 5 C -0.160 4.160 6 C 0.162 3.838 7 N -0.556 5.556 8 C -0.227 4.227 9 H 0.047 0.953 10 C -0.030 4.030 11 N -0.919 5.919 12 Si 0.944 3.056 13 H -0.272 1.272 14 H -0.296 1.296 15 H -0.293 1.293 16 C 0.105 3.895 17 C -0.184 4.184 18 C -0.221 4.221 19 H 0.048 0.952 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.246 0.754 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 7.035 -2.591 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.308 6.308 3 C 0.048 3.952 4 C -0.225 4.225 5 C -0.217 4.217 6 C 0.036 3.964 7 N -0.273 5.273 8 C -0.358 4.358 9 H 0.064 0.936 10 C -0.226 4.226 11 N -0.564 5.564 12 Si 0.774 3.226 13 H -0.197 1.197 14 H -0.223 1.223 15 H -0.220 1.220 16 C -0.003 4.003 17 C -0.223 4.223 18 C -0.262 4.262 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.070 6.781 -2.472 10.827 hybrid contribution 0.019 -1.089 0.402 1.161 sum -8.051 5.692 -2.070 10.075 Atomic orbital electron populations 1.22831 0.82399 1.02217 1.00193 1.88219 1.19114 1.28487 1.94933 1.22360 0.95752 0.82723 0.94393 1.22302 1.01903 1.00805 0.97497 1.22297 1.00818 1.00110 0.98473 1.20832 0.89176 0.95756 0.90671 1.43353 1.73971 1.01737 1.08203 1.18900 1.32403 0.83161 1.01292 0.93559 1.25627 0.96580 1.00510 0.99905 1.70147 1.36977 1.37393 1.11902 0.85577 0.76756 0.82809 0.77456 1.19690 1.22307 1.22001 1.21640 0.94288 0.95811 0.88584 1.23002 1.04671 0.99158 0.95431 1.23283 0.95058 1.01697 1.06179 0.93332 0.93539 0.90523 0.90529 0.91054 0.93666 0.92684 0.92046 0.91186 0.92141 0.93546 0.94492 0.86653 0.91112 0.87225 0.88058 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.21 113.37 1.16 1.79 16 2 O -0.39 -16.69 9.82 -148.98 -1.46 -18.16 16 3 C 0.09 3.38 0.91 -10.79 -0.01 3.37 16 4 C -0.17 -5.16 8.25 71.98 0.59 -4.57 16 5 C -0.16 -5.10 6.96 71.98 0.50 -4.60 16 6 C 0.16 7.52 4.63 86.38 0.40 7.92 16 7 N -0.56 -27.37 2.33 -678.03 -1.58 -28.95 16 8 C -0.23 -12.59 7.98 84.03 0.67 -11.92 16 9 H 0.05 2.65 6.75 -2.91 -0.02 2.63 16 10 C -0.03 -1.71 4.98 84.86 0.42 -1.29 16 11 N -0.92 -55.13 11.49 21.65 0.25 -54.88 16 12 Si 0.94 47.28 29.60 68.60 2.03 49.31 16 13 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 15 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 16 C 0.10 4.34 5.13 44.99 0.23 4.57 16 17 C -0.18 -7.14 9.80 30.60 0.30 -6.84 16 18 C -0.22 -8.95 10.36 30.60 0.32 -8.63 16 19 H 0.05 1.32 6.42 -2.39 -0.02 1.31 16 20 H 0.05 1.31 6.42 -2.39 -0.02 1.30 16 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.07 1.85 6.54 -2.39 -0.02 1.84 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.99 6.12 -2.39 -0.01 1.98 16 26 H 0.06 1.67 6.54 -2.38 -0.02 1.66 16 27 H 0.07 1.95 7.94 -2.39 -0.02 1.93 16 28 H 0.06 3.35 5.59 -2.39 -0.01 3.33 16 29 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 30 H 0.25 14.37 8.32 -92.71 -0.77 13.60 16 31 H 0.12 4.09 6.56 -2.39 -0.02 4.08 16 32 H 0.07 3.13 6.46 -2.39 -0.02 3.11 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -64.45 274.35 4.87 -59.58 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.05 Total: 13.29 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.58 Total: -20.19 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.33 Total: -83.83 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.46 Total: -18.16 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -64.45 4.87 -59.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.569 kcal (2) G-P(sol) polarization free energy of solvation -64.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds