Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46749 * 2 1 4 4 H 1.08995 * 109.47305 * 304.19693 * 3 2 1 5 5 C 1.50706 * 109.46824 * 184.20075 * 3 2 1 6 6 H 1.08001 * 119.99964 * 240.00410 * 5 3 2 7 7 C 1.37875 * 120.00202 * 60.00064 * 5 3 2 8 8 N 1.31511 * 119.99738 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47069 * 119.99867 * 9 7 5 12 12 H 1.48500 * 109.46912 * 239.99894 * 9 7 5 13 13 N 1.46897 * 109.47219 * 64.20499 * 3 2 1 14 14 C 1.46906 * 110.99704 * 204.74810 * 13 3 2 15 15 H 1.08992 * 110.56855 * 320.94469 * 14 13 3 16 16 C 1.54486 * 110.50898 * 83.63114 * 14 13 3 17 17 O 1.44425 * 104.80187 * 142.62169 * 16 14 13 18 18 C 1.44425 * 105.27823 * 319.48657 * 17 16 14 19 19 C 1.54487 * 104.80364 * 40.51113 * 18 17 16 20 20 H 1.09000 * 110.51150 * 217.38285 * 19 18 17 21 21 C 1.52990 * 110.51120 * 94.80477 * 19 18 17 22 22 H 1.09005 * 109.46920 * 174.90833 * 1 2 3 23 23 H 1.09003 * 109.47383 * 294.91019 * 1 2 3 24 24 H 1.08999 * 109.47202 * 54.91518 * 1 2 3 25 25 H 1.08998 * 109.47065 * 240.00253 * 2 1 3 26 26 H 1.09004 * 109.47110 * 120.00245 * 2 1 3 27 27 H 0.96998 * 119.99789 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00481 * 80.79503 * 13 3 2 29 29 H 1.08995 * 110.37428 * 23.79247 * 16 14 13 30 30 H 1.09003 * 110.36714 * 261.44789 * 16 14 13 31 31 H 1.08994 * 110.37567 * 159.34256 * 18 17 16 32 32 H 1.09004 * 110.36774 * 281.68194 * 18 17 16 33 33 H 1.09000 * 109.47034 * 61.45567 * 21 19 18 34 34 H 1.09002 * 109.47398 * 181.45559 * 21 19 18 35 35 H 1.09002 * 109.47432 * 301.45327 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6165 1.9776 -0.8499 5 6 3.5434 1.4438 -0.1041 6 1 4.1384 1.8920 0.6779 7 6 4.1592 0.8728 -1.1975 8 7 3.4346 0.3266 -2.1495 9 14 6.0228 0.8738 -1.3261 10 1 6.6009 1.5435 -0.1334 11 1 6.5150 -0.5255 -1.3947 12 1 6.4339 1.6038 -2.5523 13 7 1.6349 2.1051 1.2470 14 6 1.5641 3.5617 1.0701 15 1 2.3820 3.9112 0.4402 16 6 0.2023 3.9678 0.4640 17 8 -0.1376 5.2092 1.1190 18 6 0.2453 5.0283 2.4998 19 6 1.5930 4.2754 2.4403 20 1 1.6598 3.5474 3.2487 21 6 2.7611 5.2609 2.5101 22 1 -0.3633 -1.0237 -0.0912 23 1 -0.3634 0.4329 0.9321 24 1 -0.3633 0.5907 -0.8409 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8679 -0.0754 -2.9186 28 1 2.2565 1.8625 2.0038 29 1 -0.5496 3.2081 0.6771 30 1 0.2958 4.1194 -0.6114 31 1 0.3717 5.9944 2.9883 32 1 -0.5001 4.4311 3.0251 33 1 2.7239 5.8020 3.4555 34 1 3.7019 4.7147 2.4408 35 1 2.6899 5.9680 1.6836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688003325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -62.265590 kcal Electronic energy + Delta-G solvation = -15098.913324 eV Core-core repulsion = 12710.181698 eV Total energy + Delta-G solvation = -2388.731626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23340 -35.85061 -33.25523 -31.90290 -30.72913 -27.81037 -26.24217 -25.45206 -22.92599 -21.50654 -19.89712 -19.26199 -16.60221 -15.85805 -15.67016 -14.71126 -14.64837 -14.14542 -13.48851 -13.03488 -12.91300 -12.61729 -12.17204 -11.99628 -11.48212 -11.42599 -11.13476 -11.06449 -10.75517 -10.55965 -10.52463 -10.25955 -10.07101 -9.61361 -9.48443 -9.32388 -9.07744 -8.41205 -7.34404 -6.03226 -4.16208 3.23384 3.32218 3.34846 4.36270 4.38034 4.93699 5.08320 5.21145 5.24235 5.39181 5.73986 5.76937 5.89131 5.95510 6.04785 6.14342 6.33015 6.36360 6.37785 6.45292 6.47476 6.67609 6.69246 7.03358 7.13376 7.19806 7.41859 7.57797 7.74675 8.04498 8.10556 8.29031 8.60136 8.95927 9.51723 10.97081 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.010088 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.734459 B = 2774.804230 C = 3393.132326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.213 3.787 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.067 3.933 15 H 0.060 0.940 16 C 0.055 3.945 17 O -0.385 6.385 18 C 0.054 3.946 19 C -0.128 4.128 20 H 0.084 0.916 21 C -0.140 4.140 22 H 0.025 0.975 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 5.493 7.042 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.106 3.894 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.044 4.044 15 H 0.078 0.922 16 C -0.022 4.022 17 O -0.303 6.303 18 C -0.023 4.023 19 C -0.148 4.148 20 H 0.103 0.897 21 C -0.197 4.197 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.371 5.496 6.644 9.667 hybrid contribution 2.194 -0.088 -0.147 2.200 sum -2.177 5.408 6.497 8.729 Atomic orbital electron populations 1.21701 0.98988 0.98359 1.00335 1.21498 0.92078 0.99186 1.01731 1.19204 0.92770 0.91190 0.86275 0.94937 1.21883 0.92650 1.38024 1.05881 0.92845 1.24932 0.97973 0.94967 0.95645 1.69882 1.34812 1.37953 1.09556 0.86608 0.86090 0.77753 0.77947 1.19949 1.20945 1.21022 1.60999 1.56009 1.04314 1.09730 1.22750 0.96979 0.90540 0.94177 0.92161 1.23515 0.96125 0.85376 0.97199 1.89045 1.84417 1.36076 1.20807 1.23357 0.94638 0.99765 0.84532 1.22651 0.95393 0.97811 0.98897 0.89746 1.21793 0.97883 0.98879 1.01193 0.95626 0.93522 0.94422 0.89136 0.95088 0.92898 0.85252 0.91484 0.89803 0.89968 0.92644 0.93051 0.92356 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.73 37.16 0.36 -2.40 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.21 5.13 1.85 -68.86 -0.13 5.00 16 4 H 0.03 0.87 7.64 -51.93 -0.40 0.47 16 5 C -0.55 -14.38 8.28 -34.44 -0.29 -14.67 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.04 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.73 5.51 -99.31 -0.55 -14.27 16 14 C 0.07 1.24 2.87 -66.13 -0.19 1.05 16 15 H 0.06 1.27 7.35 -51.93 -0.38 0.89 16 16 C 0.06 0.99 7.02 37.94 0.27 1.26 16 17 O -0.38 -6.67 11.65 -35.23 -0.41 -7.08 16 18 C 0.05 0.78 7.18 37.94 0.27 1.05 16 19 C -0.13 -1.94 3.38 -89.05 -0.30 -2.24 16 20 H 0.08 1.23 7.67 -51.93 -0.40 0.83 16 21 C -0.14 -1.94 8.95 37.15 0.33 -1.60 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.59 7.95 -39.29 -0.31 6.28 16 29 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -27.16 280.89 -6.99 -34.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.96 Total: 4.57 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.08 Total: -38.31 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.41 Total: -7.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.16 -6.99 -34.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.112 kcal (2) G-P(sol) polarization free energy of solvation -27.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds