Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46749 * 2 1 4 4 H 1.08995 * 109.47305 * 304.19693 * 3 2 1 5 5 C 1.50706 * 109.46824 * 184.20075 * 3 2 1 6 6 H 1.08001 * 119.99964 * 240.00410 * 5 3 2 7 7 C 1.37875 * 120.00202 * 60.00064 * 5 3 2 8 8 N 1.31511 * 119.99738 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47069 * 119.99867 * 9 7 5 12 12 H 1.48500 * 109.46912 * 239.99894 * 9 7 5 13 13 N 1.46897 * 109.47219 * 64.20499 * 3 2 1 14 14 C 1.46906 * 110.99704 * 204.74810 * 13 3 2 15 15 H 1.08992 * 110.56855 * 320.94469 * 14 13 3 16 16 C 1.54486 * 110.50898 * 83.63114 * 14 13 3 17 17 O 1.44425 * 104.80187 * 142.62169 * 16 14 13 18 18 C 1.44425 * 105.27823 * 319.48657 * 17 16 14 19 19 C 1.54487 * 104.80364 * 40.51113 * 18 17 16 20 20 H 1.09000 * 110.51150 * 217.38285 * 19 18 17 21 21 C 1.52990 * 110.51120 * 94.80477 * 19 18 17 22 22 H 1.09005 * 109.46920 * 174.90833 * 1 2 3 23 23 H 1.09003 * 109.47383 * 294.91019 * 1 2 3 24 24 H 1.08999 * 109.47202 * 54.91518 * 1 2 3 25 25 H 1.08998 * 109.47065 * 240.00253 * 2 1 3 26 26 H 1.09004 * 109.47110 * 120.00245 * 2 1 3 27 27 H 0.96998 * 119.99789 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00481 * 80.79503 * 13 3 2 29 29 H 1.08995 * 110.37428 * 23.79247 * 16 14 13 30 30 H 1.09003 * 110.36714 * 261.44789 * 16 14 13 31 31 H 1.08994 * 110.37567 * 159.34256 * 18 17 16 32 32 H 1.09004 * 110.36774 * 281.68194 * 18 17 16 33 33 H 1.09000 * 109.47034 * 61.45567 * 21 19 18 34 34 H 1.09002 * 109.47398 * 181.45559 * 21 19 18 35 35 H 1.09002 * 109.47432 * 301.45327 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6165 1.9776 -0.8499 5 6 3.5434 1.4438 -0.1041 6 1 4.1384 1.8920 0.6779 7 6 4.1592 0.8728 -1.1975 8 7 3.4346 0.3266 -2.1495 9 14 6.0228 0.8738 -1.3261 10 1 6.6009 1.5435 -0.1334 11 1 6.5150 -0.5255 -1.3947 12 1 6.4339 1.6038 -2.5523 13 7 1.6349 2.1051 1.2470 14 6 1.5641 3.5617 1.0701 15 1 2.3820 3.9112 0.4402 16 6 0.2023 3.9678 0.4640 17 8 -0.1376 5.2092 1.1190 18 6 0.2453 5.0283 2.4998 19 6 1.5930 4.2754 2.4403 20 1 1.6598 3.5474 3.2487 21 6 2.7611 5.2609 2.5101 22 1 -0.3633 -1.0237 -0.0912 23 1 -0.3634 0.4329 0.9321 24 1 -0.3633 0.5907 -0.8409 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8679 -0.0754 -2.9186 28 1 2.2565 1.8625 2.0038 29 1 -0.5496 3.2081 0.6771 30 1 0.2958 4.1194 -0.6114 31 1 0.3717 5.9944 2.9883 32 1 -0.5001 4.4311 3.0251 33 1 2.7239 5.8020 3.4555 34 1 3.7019 4.7147 2.4408 35 1 2.6899 5.9680 1.6836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688003325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -79.787325 kcal Electronic energy + Delta-G solvation = -15099.673124 eV Core-core repulsion = 12710.181698 eV Total energy + Delta-G solvation = -2389.491426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60532 -37.61933 -34.81030 -33.69980 -32.32492 -29.44203 -27.76432 -26.94458 -24.74913 -22.94501 -21.44360 -20.93687 -18.62336 -17.31565 -17.01736 -16.62627 -16.00392 -15.63369 -15.27594 -14.71829 -14.35467 -14.17004 -13.47433 -13.28893 -13.25606 -13.14424 -12.97257 -12.75082 -12.50627 -12.23504 -11.84410 -11.71140 -11.67215 -11.48244 -11.24816 -10.98415 -10.63574 -10.47118 -9.11683 -8.07165 -6.28722 1.35477 1.38633 1.47898 2.38575 3.05346 3.14867 3.59704 3.66477 4.01294 4.10572 4.36369 4.50575 4.59056 4.61916 4.75678 4.77339 4.89276 4.90291 4.93684 5.00598 5.08828 5.15427 5.16780 5.34217 5.42553 5.51762 5.61590 5.74233 5.90429 6.10779 6.18871 6.37487 6.79655 6.99565 7.42767 8.89896 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.010088 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.734459 B = 2774.804230 C = 3393.132326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.000 1.000 5 C -0.557 4.557 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.666 5.666 14 C 0.063 3.937 15 H 0.029 0.971 16 C 0.061 3.939 17 O -0.396 6.396 18 C 0.053 3.947 19 C -0.122 4.122 20 H 0.096 0.904 21 C -0.137 4.137 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 6.063 8.702 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.596 4.596 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.297 5.297 14 C -0.048 4.048 15 H 0.047 0.953 16 C -0.016 4.016 17 O -0.315 6.315 18 C -0.024 4.024 19 C -0.141 4.141 20 H 0.114 0.886 21 C -0.194 4.194 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.433 6.075 8.322 11.217 hybrid contribution 2.194 -0.230 -0.644 2.298 sum -2.240 5.844 7.678 9.906 Atomic orbital electron populations 1.21562 0.96370 0.99579 1.00657 1.21359 0.94398 0.98282 1.00115 1.18957 0.91471 0.91506 0.86760 0.98225 1.22184 0.94031 1.37640 1.05782 0.93210 1.25650 1.02020 0.94858 0.95508 1.70008 1.36329 1.38610 1.09970 0.85659 0.81266 0.77753 0.77850 1.19432 1.20530 1.20956 1.60917 1.55395 1.05329 1.08052 1.22764 0.96242 0.89591 0.96215 0.95327 1.23333 0.95710 0.85883 0.96692 1.89036 1.84519 1.35443 1.22517 1.23589 0.94144 1.01464 0.83169 1.22634 0.96661 0.98098 0.96687 0.88584 1.21771 0.96676 0.98438 1.02512 0.93761 0.92270 0.95115 0.92176 0.95155 0.92914 0.84897 0.91453 0.91114 0.87208 0.91265 0.89935 0.93517 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.73 71.98 0.70 -4.22 16 2 C -0.10 -4.86 5.45 30.59 0.17 -4.69 16 3 C 0.22 10.83 1.85 44.17 0.08 10.91 16 4 H 0.00 -0.01 7.64 -2.39 -0.02 -0.03 16 5 C -0.56 -29.77 8.28 25.60 0.21 -29.56 16 6 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.52 16 9 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.67 -26.69 5.51 -468.10 -2.58 -29.26 16 14 C 0.06 2.32 2.87 45.93 0.13 2.45 16 15 H 0.03 1.24 7.35 -2.39 -0.02 1.22 16 16 C 0.06 2.19 7.02 72.49 0.51 2.70 16 17 O -0.40 -13.11 11.65 -148.98 -1.74 -14.85 16 18 C 0.05 1.35 7.18 72.49 0.52 1.87 16 19 C -0.12 -3.42 3.38 -9.78 -0.03 -3.46 16 20 H 0.10 2.51 7.67 -2.39 -0.02 2.49 16 21 C -0.14 -3.49 8.95 71.98 0.64 -2.85 16 22 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.06 2.18 7.87 -2.39 -0.02 2.16 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 3.23 5.97 -2.39 -0.01 3.21 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.33 13.02 7.95 -89.70 -0.71 12.31 16 29 H 0.07 2.40 8.06 -2.39 -0.02 2.38 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.24 7.87 -2.39 -0.02 2.22 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -58.04 280.89 1.67 -56.37 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.33 Total: 19.35 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 3.38 Total: -25.31 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.34 Total: -80.78 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.74 Total: -14.85 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.04 1.67 -56.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.415 kcal (2) G-P(sol) polarization free energy of solvation -58.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds