Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47382 * 2 1 4 4 H 1.09003 * 109.47029 * 305.54094 * 3 2 1 5 5 C 1.50693 * 109.47050 * 185.53802 * 3 2 1 6 6 H 1.08006 * 120.00194 * 239.99885 * 5 3 2 7 7 C 1.37878 * 120.00112 * 60.00078 * 5 3 2 8 8 N 1.31514 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47293 * 59.99919 * 9 7 5 11 11 H 1.48500 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47410 * 300.00159 * 9 7 5 13 13 N 1.46906 * 109.46829 * 65.53924 * 3 2 1 14 14 C 1.46897 * 110.99903 * 261.41214 * 13 3 2 15 15 H 1.08998 * 110.45912 * 41.98422 * 14 13 3 16 16 C 1.54483 * 110.50614 * 279.23236 * 14 13 3 17 17 O 1.44429 * 104.80201 * 217.37426 * 16 14 13 18 18 C 1.44422 * 105.27249 * 40.51498 * 17 16 14 19 19 C 1.54482 * 104.80465 * 319.48888 * 18 17 16 20 20 H 1.09006 * 110.62609 * 265.27582 * 19 18 17 21 21 C 1.52998 * 110.51278 * 142.62745 * 19 18 17 22 22 H 1.08998 * 109.47406 * 299.07920 * 1 2 3 23 23 H 1.09003 * 109.47254 * 59.07414 * 1 2 3 24 24 H 1.08997 * 109.47445 * 179.06989 * 1 2 3 25 25 H 1.09007 * 109.47063 * 239.99615 * 2 1 3 26 26 H 1.09006 * 109.47196 * 120.00222 * 2 1 3 27 27 H 0.97004 * 119.99565 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00007 * 25.36414 * 13 3 2 29 29 H 1.08998 * 110.37828 * 336.20752 * 16 14 13 30 30 H 1.09007 * 110.37432 * 98.43873 * 16 14 13 31 31 H 1.08995 * 110.37626 * 200.65448 * 18 17 16 32 32 H 1.09007 * 110.37524 * 78.31790 * 18 17 16 33 33 H 1.09006 * 109.46850 * 299.16972 * 21 19 18 34 34 H 1.09005 * 109.46903 * 179.17687 * 21 19 18 35 35 H 1.08991 * 109.47534 * 59.17434 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8362 5 6 3.5407 1.4446 -0.1371 6 1 4.1529 1.8868 0.6350 7 6 4.1323 0.8822 -1.2483 8 7 3.3868 0.3434 -2.1883 9 14 5.9925 0.8854 -1.4186 10 1 6.5952 0.1479 -0.2793 11 1 6.3741 0.2259 -2.6932 12 1 6.4871 2.2857 -1.4189 13 7 1.6626 2.0953 1.2608 14 6 0.4546 2.9133 1.0889 15 1 -0.2771 2.3881 0.4751 16 6 0.8108 4.2794 0.4617 17 8 -0.0630 5.2250 1.1160 18 6 -0.0912 4.8207 2.5022 19 6 -0.1524 3.2776 2.4622 20 1 -1.1843 2.9324 2.5274 21 6 0.6844 2.6784 3.5943 22 1 -0.3634 0.4994 0.8981 23 1 -0.3634 0.5282 -0.8816 24 1 -0.3634 -1.0275 -0.0167 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8030 -0.0520 -2.9702 28 1 1.5377 1.4161 1.9963 29 1 1.8538 4.5272 0.6589 30 1 0.6214 4.2651 -0.6117 31 1 -0.9754 5.2228 2.9969 32 1 0.8134 5.1515 3.0125 33 1 1.7246 2.9824 3.4773 34 1 0.6176 1.5910 3.5590 35 1 0.3072 3.0347 4.5528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688003328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -51.013556 kcal Electronic energy + Delta-G solvation = -15219.699471 eV Core-core repulsion = 12831.455769 eV Total energy + Delta-G solvation = -2388.243701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36409 -36.13717 -33.40497 -31.83172 -30.33876 -27.95044 -26.02310 -25.87327 -22.95486 -21.84216 -19.77725 -19.16140 -16.58445 -15.89618 -15.30408 -14.91301 -14.70769 -14.54819 -13.73358 -13.16882 -12.92155 -12.41681 -12.24750 -11.86797 -11.66299 -11.29422 -11.11675 -10.82237 -10.70507 -10.65861 -10.53182 -10.29990 -10.03731 -9.76397 -9.70644 -9.38080 -9.03138 -8.32528 -7.22610 -5.97351 -4.00686 3.34673 3.38887 3.42165 4.35277 4.46778 4.88989 5.02977 5.25572 5.32575 5.34896 5.66477 5.77425 5.84464 5.93860 6.01955 6.08781 6.10779 6.14107 6.30479 6.36909 6.41513 6.50063 6.60159 6.78281 6.92931 7.13183 7.19156 7.43015 7.74698 7.90298 8.29868 8.54926 8.59617 9.06702 9.64405 11.08672 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.009204 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.543985 B = 3041.301921 C = 3316.886602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.057 3.943 15 H 0.051 0.949 16 C 0.056 3.944 17 O -0.387 6.387 18 C 0.055 3.945 19 C -0.128 4.128 20 H 0.072 0.928 21 C -0.139 4.139 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 3.308 7.700 10.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.055 4.055 15 H 0.068 0.932 16 C -0.021 4.021 17 O -0.305 6.305 18 C -0.022 4.022 19 C -0.147 4.147 20 H 0.091 0.909 21 C -0.196 4.196 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.870 3.928 7.328 10.177 hybrid contribution 0.350 -1.045 -0.228 1.126 sum -5.520 2.883 7.099 9.443 Atomic orbital electron populations 1.21938 0.99585 0.99413 0.99773 1.22242 0.91467 1.02051 1.02964 1.19238 0.95466 0.88722 0.85781 0.95240 1.21168 0.91161 1.36084 1.04674 0.91992 1.24960 0.98099 0.95627 0.95904 1.69861 1.34785 1.39482 1.09585 0.86594 0.85746 0.78167 0.77046 1.20428 1.21533 1.20353 1.61021 1.30890 1.28437 1.10320 1.22889 0.92738 0.95605 0.94219 0.93156 1.23513 0.94654 0.86888 0.97011 1.89044 1.68417 1.52742 1.20313 1.23376 1.01120 0.93325 0.84424 1.22621 0.99640 0.96188 0.96271 0.90924 1.21687 1.01377 1.00466 0.96096 0.94690 0.93719 0.94669 0.88151 0.94721 0.93043 0.85064 0.90777 0.89760 0.90126 0.92290 0.90486 0.92595 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.70 37.16 0.32 -2.57 16 2 C -0.15 -3.39 5.12 -26.73 -0.14 -3.52 16 3 C 0.22 5.18 2.04 -68.86 -0.14 5.04 16 4 H 0.03 0.79 7.46 -51.93 -0.39 0.40 16 5 C -0.49 -13.27 8.84 -34.44 -0.30 -13.58 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.24 11.29 55.43 0.63 -24.61 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.67 -13.55 4.92 -99.31 -0.49 -14.03 16 14 C 0.06 1.01 2.48 -66.15 -0.16 0.85 16 15 H 0.05 0.95 5.93 -51.93 -0.31 0.64 16 16 C 0.06 1.04 6.97 37.94 0.26 1.31 16 17 O -0.39 -6.77 11.65 -35.23 -0.41 -7.18 16 18 C 0.05 0.78 7.18 37.94 0.27 1.05 16 19 C -0.13 -1.87 3.72 -89.05 -0.33 -2.20 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.14 -1.84 7.84 37.16 0.29 -1.55 16 22 H 0.03 0.61 6.37 -51.93 -0.33 0.28 16 23 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 26 H 0.03 0.77 8.02 -51.93 -0.42 0.36 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.33 6.25 5.66 -39.30 -0.22 6.03 16 29 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.08 1.14 7.57 -51.93 -0.39 0.74 16 34 H 0.06 0.74 7.08 -51.93 -0.37 0.37 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 271.79 15.07 4.10 4.10 Total: -1.00 -27.59 271.79 -6.86 -34.44 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.64 Total: 4.74 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.02 Total: -13.78 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.14 Total: -38.65 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.41 Total: -7.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.59 -6.86 -34.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.570 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds