Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47382 * 2 1 4 4 H 1.09003 * 109.47029 * 305.54094 * 3 2 1 5 5 C 1.50693 * 109.47050 * 185.53802 * 3 2 1 6 6 H 1.08006 * 120.00194 * 239.99885 * 5 3 2 7 7 C 1.37878 * 120.00112 * 60.00078 * 5 3 2 8 8 N 1.31514 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47293 * 59.99919 * 9 7 5 11 11 H 1.48500 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47410 * 300.00159 * 9 7 5 13 13 N 1.46906 * 109.46829 * 65.53924 * 3 2 1 14 14 C 1.46897 * 110.99903 * 261.41214 * 13 3 2 15 15 H 1.08998 * 110.45912 * 41.98422 * 14 13 3 16 16 C 1.54483 * 110.50614 * 279.23236 * 14 13 3 17 17 O 1.44429 * 104.80201 * 217.37426 * 16 14 13 18 18 C 1.44422 * 105.27249 * 40.51498 * 17 16 14 19 19 C 1.54482 * 104.80465 * 319.48888 * 18 17 16 20 20 H 1.09006 * 110.62609 * 265.27582 * 19 18 17 21 21 C 1.52998 * 110.51278 * 142.62745 * 19 18 17 22 22 H 1.08998 * 109.47406 * 299.07920 * 1 2 3 23 23 H 1.09003 * 109.47254 * 59.07414 * 1 2 3 24 24 H 1.08997 * 109.47445 * 179.06989 * 1 2 3 25 25 H 1.09007 * 109.47063 * 239.99615 * 2 1 3 26 26 H 1.09006 * 109.47196 * 120.00222 * 2 1 3 27 27 H 0.97004 * 119.99565 * 179.97438 * 8 7 5 28 28 H 1.00894 * 111.00007 * 25.36414 * 13 3 2 29 29 H 1.08998 * 110.37828 * 336.20752 * 16 14 13 30 30 H 1.09007 * 110.37432 * 98.43873 * 16 14 13 31 31 H 1.08995 * 110.37626 * 200.65448 * 18 17 16 32 32 H 1.09007 * 110.37524 * 78.31790 * 18 17 16 33 33 H 1.09006 * 109.46850 * 299.16972 * 21 19 18 34 34 H 1.09005 * 109.46903 * 179.17687 * 21 19 18 35 35 H 1.08991 * 109.47534 * 59.17434 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8362 5 6 3.5407 1.4446 -0.1371 6 1 4.1529 1.8868 0.6350 7 6 4.1323 0.8822 -1.2483 8 7 3.3868 0.3434 -2.1883 9 14 5.9925 0.8854 -1.4186 10 1 6.5952 0.1479 -0.2793 11 1 6.3741 0.2259 -2.6932 12 1 6.4871 2.2857 -1.4189 13 7 1.6626 2.0953 1.2608 14 6 0.4546 2.9133 1.0889 15 1 -0.2771 2.3881 0.4751 16 6 0.8108 4.2794 0.4617 17 8 -0.0630 5.2250 1.1160 18 6 -0.0912 4.8207 2.5022 19 6 -0.1524 3.2776 2.4622 20 1 -1.1843 2.9324 2.5274 21 6 0.6844 2.6784 3.5943 22 1 -0.3634 0.4994 0.8981 23 1 -0.3634 0.5282 -0.8816 24 1 -0.3634 -1.0275 -0.0167 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8030 -0.0520 -2.9702 28 1 1.5377 1.4161 1.9963 29 1 1.8538 4.5272 0.6589 30 1 0.6214 4.2651 -0.6117 31 1 -0.9754 5.2228 2.9969 32 1 0.8134 5.1515 3.0125 33 1 1.7246 2.9824 3.4773 34 1 0.6176 1.5910 3.5590 35 1 0.3072 3.0347 4.5528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688003328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -68.856996 kcal Electronic energy + Delta-G solvation = -15220.473220 eV Core-core repulsion = 12831.455769 eV Total energy + Delta-G solvation = -2389.017451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73601 -37.82964 -34.98905 -33.62129 -31.86941 -29.58798 -27.77316 -27.08764 -24.77712 -23.21674 -21.59666 -20.53055 -18.44256 -17.41891 -16.81243 -16.58974 -16.24613 -15.99009 -15.37429 -14.79699 -14.49600 -13.89028 -13.74120 -13.33005 -13.09901 -13.07746 -12.75325 -12.54892 -12.45892 -12.01874 -11.93088 -11.80612 -11.71432 -11.58858 -11.34409 -10.95453 -10.72582 -10.40152 -8.90794 -8.05314 -6.15880 1.43848 1.44754 1.52305 2.45409 3.05997 3.21487 3.62242 3.66485 3.97036 4.07858 4.37326 4.42529 4.47787 4.54149 4.63628 4.67832 4.78211 4.85289 4.91409 4.95111 5.02952 5.08617 5.16913 5.26050 5.37819 5.50692 5.54606 5.74392 5.86749 5.90164 6.36363 6.69889 6.89575 6.98962 7.53485 8.98356 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.009204 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.543985 B = 3041.301921 C = 3316.886602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.510 4.510 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.671 5.671 14 C 0.053 3.947 15 H 0.043 0.957 16 C 0.060 3.940 17 O -0.398 6.398 18 C 0.050 3.950 19 C -0.120 4.120 20 H 0.092 0.908 21 C -0.135 4.135 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.259 0.741 28 H 0.338 0.662 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 3.400 9.376 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.114 3.886 4 H 0.015 0.985 5 C -0.549 4.549 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.057 4.057 15 H 0.061 0.939 16 C -0.018 4.018 17 O -0.317 6.317 18 C -0.026 4.026 19 C -0.139 4.139 20 H 0.110 0.890 21 C -0.192 4.192 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.552 4.025 9.026 11.857 hybrid contribution 0.532 -1.027 -0.718 1.361 sum -6.020 2.998 8.308 10.689 Atomic orbital electron populations 1.21793 0.96645 1.00813 1.00264 1.22061 0.94088 1.00681 1.01340 1.18962 0.93881 0.89315 0.86402 0.98526 1.21490 0.92890 1.35924 1.04553 0.92891 1.25668 1.02091 0.95428 0.95724 1.69996 1.36222 1.40027 1.09872 0.85668 0.81022 0.78105 0.77114 1.19730 1.21238 1.20181 1.60860 1.32578 1.28305 1.08716 1.22909 0.91689 0.94557 0.96593 0.93866 1.23327 0.93932 0.87789 0.96731 1.89032 1.67879 1.52605 1.22142 1.23641 1.02910 0.93220 0.82877 1.22630 1.00544 0.96449 0.94288 0.88980 1.21645 1.00116 1.00508 0.96964 0.92730 0.94683 0.92739 0.91490 0.94503 0.93194 0.84100 0.92593 0.90962 0.86971 0.91879 0.92324 0.92464 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.70 71.98 0.63 -4.52 16 2 C -0.14 -6.53 5.12 30.59 0.16 -6.37 16 3 C 0.22 10.89 2.04 44.17 0.09 10.98 16 4 H 0.00 -0.17 7.46 -2.39 -0.02 -0.19 16 5 C -0.51 -27.95 8.84 25.60 0.23 -27.73 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -52.83 11.29 21.45 0.24 -52.58 16 9 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.67 -26.77 4.92 -468.12 -2.30 -29.07 16 14 C 0.05 1.87 2.48 45.93 0.11 1.98 16 15 H 0.04 1.59 5.93 -2.39 -0.01 1.58 16 16 C 0.06 2.22 6.97 72.49 0.51 2.73 16 17 O -0.40 -13.44 11.65 -148.98 -1.74 -15.17 16 18 C 0.05 1.29 7.18 72.49 0.52 1.81 16 19 C -0.12 -3.16 3.72 -9.78 -0.04 -3.20 16 20 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 21 C -0.13 -3.18 7.84 71.98 0.56 -2.61 16 22 H 0.05 1.81 6.37 -2.39 -0.02 1.79 16 23 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 3.56 5.94 -2.38 -0.01 3.54 16 26 H 0.04 1.63 8.02 -2.38 -0.02 1.61 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.34 12.41 5.66 -89.70 -0.51 11.90 16 29 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 30 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 1.59 7.87 -2.38 -0.02 1.57 16 33 H 0.06 1.61 7.57 -2.38 -0.02 1.59 16 34 H 0.06 1.34 7.08 -2.38 -0.02 1.32 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -59.47 271.79 2.00 -57.47 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.55 Total: 19.23 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.21 Total: -26.00 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.06 Total: -81.66 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.74 Total: -15.17 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.47 2.00 -57.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.385 kcal (2) G-P(sol) polarization free energy of solvation -59.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds