Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 H 1.09002 * 109.46970 * 305.23827 * 3 2 1 5 5 C 1.50701 * 109.47429 * 185.24166 * 3 2 1 6 6 H 1.07997 * 119.99683 * 240.00446 * 5 3 2 7 7 C 1.37871 * 119.99906 * 59.99529 * 5 3 2 8 8 N 1.31513 * 120.00670 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99908 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46949 * 60.00237 * 9 7 5 11 11 H 1.48500 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47289 * 300.00437 * 9 7 5 13 13 N 1.46901 * 109.47034 * 65.23646 * 3 2 1 14 14 C 1.46897 * 111.00418 * 257.39429 * 13 3 2 15 15 H 1.09005 * 110.45571 * 31.77875 * 14 13 3 16 16 C 1.54472 * 110.51362 * 269.17644 * 14 13 3 17 17 O 1.44643 * 104.69600 * 217.47718 * 16 14 13 18 18 C 1.44419 * 105.37408 * 40.34041 * 17 16 14 19 19 C 1.54487 * 104.80330 * 319.57027 * 18 17 16 20 20 H 1.08993 * 110.62909 * 142.67403 * 19 18 17 21 21 C 1.53001 * 110.50885 * 265.33434 * 19 18 17 22 22 H 1.09000 * 109.47583 * 56.98735 * 1 2 3 23 23 H 1.09003 * 109.47227 * 176.99395 * 1 2 3 24 24 H 1.09000 * 109.47078 * 296.98652 * 1 2 3 25 25 H 1.08994 * 109.47481 * 120.00448 * 2 1 3 26 26 H 1.08999 * 109.46947 * 240.00486 * 2 1 3 27 27 H 0.96992 * 120.00517 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99891 * 21.34878 * 13 3 2 29 29 H 1.09009 * 110.37136 * 336.20078 * 16 14 13 30 30 H 1.08999 * 110.37698 * 98.54176 * 16 14 13 31 31 H 1.08993 * 110.37623 * 200.73906 * 18 17 16 32 32 H 1.09002 * 110.36870 * 78.39490 * 18 17 16 33 33 H 1.09003 * 109.46399 * 174.64322 * 21 19 18 34 34 H 1.09000 * 109.46532 * 294.63348 * 21 19 18 35 35 H 1.08991 * 109.47307 * 54.63719 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1298 6 1 4.1497 1.8880 0.6446 7 6 4.1384 0.8801 -1.2370 8 7 3.3977 0.3404 -2.1802 9 14 5.9995 0.8820 -1.3976 10 1 6.5957 0.1456 -0.2541 11 1 6.3873 0.2205 -2.6693 12 1 6.4950 2.2819 -1.3972 13 7 1.6563 2.0975 1.2576 14 6 0.5065 2.9895 1.0572 15 1 -0.1443 2.6020 0.2733 16 6 0.9830 4.4169 0.7085 17 8 0.0501 5.2908 1.3854 18 6 -0.1847 4.6776 2.6716 19 6 -0.2795 3.1642 2.3760 20 1 0.1838 2.5869 3.1760 21 6 -1.7391 2.7448 2.1898 22 1 -0.3634 0.5599 -0.8617 23 1 -0.3634 -1.0263 -0.0539 24 1 -0.3633 0.4663 0.9158 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8176 -0.0563 -2.9593 28 1 1.4642 1.4159 1.9764 29 1 1.9943 4.5810 1.0810 30 1 0.9438 4.5775 -0.3689 31 1 -1.1194 5.0397 3.0998 32 1 0.6468 4.8809 3.3464 33 1 -1.7806 1.6979 1.8890 34 1 -2.2770 2.8746 3.1289 35 1 -2.1992 3.3629 1.4190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688003332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = -57.644079 kcal Electronic energy + Delta-G solvation = -15131.388075 eV Core-core repulsion = 12742.856852 eV Total energy + Delta-G solvation = -2388.531223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30807 -36.09413 -33.22829 -31.91128 -30.64667 -27.86297 -26.30878 -25.64242 -22.90245 -21.52778 -20.14355 -19.42585 -16.38861 -15.86189 -15.52927 -14.85809 -14.62416 -14.37310 -13.49064 -13.17051 -12.97828 -12.59033 -12.28543 -12.10978 -11.71956 -11.52137 -11.16965 -10.79945 -10.72631 -10.69374 -10.60181 -10.33861 -10.04147 -9.75945 -9.68374 -9.34289 -9.04335 -8.32912 -7.25964 -5.97306 -4.00742 3.34823 3.38903 3.42336 4.33699 4.46253 4.84680 5.00934 5.16601 5.31617 5.32572 5.65543 5.70303 5.81268 5.87281 5.95382 6.08408 6.09943 6.10565 6.27417 6.30564 6.37601 6.45748 6.49290 6.79323 6.91948 7.11446 7.17992 7.41866 7.74245 7.90622 8.29394 8.52979 8.59088 9.06727 9.64334 11.08622 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037398 B = 0.008965 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.531573 B = 3122.376148 C = 3602.809895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.028 0.972 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.062 3.938 15 H 0.055 0.945 16 C 0.055 3.945 17 O -0.386 6.386 18 C 0.055 3.945 19 C -0.132 4.132 20 H 0.085 0.915 21 C -0.141 4.141 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.100 0.900 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 3.217 7.086 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.049 4.049 15 H 0.073 0.927 16 C -0.022 4.022 17 O -0.305 6.305 18 C -0.022 4.022 19 C -0.152 4.152 20 H 0.103 0.897 21 C -0.199 4.199 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.107 3.834 6.748 10.524 hybrid contribution 0.374 -1.010 -0.234 1.102 sum -6.732 2.825 6.514 9.784 Atomic orbital electron populations 1.21931 0.99535 0.99485 0.99743 1.22211 0.91486 1.01872 1.03024 1.19270 0.95461 0.88836 0.85457 0.95374 1.21190 0.91165 1.36005 1.04762 0.91967 1.24961 0.98141 0.95624 0.95871 1.69853 1.34838 1.39450 1.09626 0.86593 0.85730 0.78174 0.77055 1.20412 1.21510 1.20351 1.60857 1.33862 1.24336 1.11492 1.22951 0.91768 0.95126 0.95045 0.92739 1.23577 0.93212 0.87995 0.97400 1.89070 1.65066 1.47810 1.28561 1.23325 1.00528 0.91528 0.86841 1.22739 0.96477 0.97198 0.98739 0.89703 1.21832 0.95169 1.01486 1.01399 0.93802 0.94645 0.94638 0.94594 0.88160 0.93029 0.85608 0.90880 0.89692 0.89953 0.92529 0.92437 0.92866 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.77 37.16 0.33 -2.53 16 2 C -0.15 -3.35 5.08 -26.73 -0.14 -3.49 16 3 C 0.22 5.25 2.11 -68.86 -0.15 5.10 16 4 H 0.03 0.76 7.48 -51.93 -0.39 0.37 16 5 C -0.49 -13.37 8.84 -34.44 -0.30 -13.68 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.31 11.29 55.43 0.63 -24.68 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.72 5.88 -99.31 -0.58 -14.30 16 14 C 0.06 1.11 2.06 -66.15 -0.14 0.98 16 15 H 0.05 1.04 6.14 -51.93 -0.32 0.72 16 16 C 0.06 1.01 7.37 37.93 0.28 1.29 16 17 O -0.39 -6.66 11.65 -35.23 -0.41 -7.07 16 18 C 0.05 0.77 7.19 37.94 0.27 1.05 16 19 C -0.13 -1.91 3.39 -89.05 -0.30 -2.21 16 20 H 0.08 1.18 7.54 -51.93 -0.39 0.79 16 21 C -0.14 -1.78 8.94 37.16 0.33 -1.45 16 22 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.61 5.78 -51.93 -0.30 0.31 16 25 H 0.04 0.80 8.04 -51.93 -0.42 0.39 16 26 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.33 6.24 7.23 -39.29 -0.28 5.96 16 29 H 0.07 1.41 8.06 -51.92 -0.42 0.99 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.74 7.07 -51.93 -0.37 0.37 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -27.75 274.78 -6.84 -34.59 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.68 Total: 4.48 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.04 Total: -38.99 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.41 Total: -7.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.75 -6.84 -34.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.055 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds