Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 H 1.09002 * 109.46970 * 305.23827 * 3 2 1 5 5 C 1.50701 * 109.47429 * 185.24166 * 3 2 1 6 6 H 1.07997 * 119.99683 * 240.00446 * 5 3 2 7 7 C 1.37871 * 119.99906 * 59.99529 * 5 3 2 8 8 N 1.31513 * 120.00670 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99908 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46949 * 60.00237 * 9 7 5 11 11 H 1.48500 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47289 * 300.00437 * 9 7 5 13 13 N 1.46901 * 109.47034 * 65.23646 * 3 2 1 14 14 C 1.46897 * 111.00418 * 257.39429 * 13 3 2 15 15 H 1.09005 * 110.45571 * 31.77875 * 14 13 3 16 16 C 1.54472 * 110.51362 * 269.17644 * 14 13 3 17 17 O 1.44643 * 104.69600 * 217.47718 * 16 14 13 18 18 C 1.44419 * 105.37408 * 40.34041 * 17 16 14 19 19 C 1.54487 * 104.80330 * 319.57027 * 18 17 16 20 20 H 1.08993 * 110.62909 * 142.67403 * 19 18 17 21 21 C 1.53001 * 110.50885 * 265.33434 * 19 18 17 22 22 H 1.09000 * 109.47583 * 56.98735 * 1 2 3 23 23 H 1.09003 * 109.47227 * 176.99395 * 1 2 3 24 24 H 1.09000 * 109.47078 * 296.98652 * 1 2 3 25 25 H 1.08994 * 109.47481 * 120.00448 * 2 1 3 26 26 H 1.08999 * 109.46947 * 240.00486 * 2 1 3 27 27 H 0.96992 * 120.00517 * 179.97438 * 8 7 5 28 28 H 1.00907 * 110.99891 * 21.34878 * 13 3 2 29 29 H 1.09009 * 110.37136 * 336.20078 * 16 14 13 30 30 H 1.08999 * 110.37698 * 98.54176 * 16 14 13 31 31 H 1.08993 * 110.37623 * 200.73906 * 18 17 16 32 32 H 1.09002 * 110.36870 * 78.39490 * 18 17 16 33 33 H 1.09003 * 109.46399 * 174.64322 * 21 19 18 34 34 H 1.09000 * 109.46532 * 294.63348 * 21 19 18 35 35 H 1.08991 * 109.47307 * 54.63719 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1298 6 1 4.1497 1.8880 0.6446 7 6 4.1384 0.8801 -1.2370 8 7 3.3977 0.3404 -2.1802 9 14 5.9995 0.8820 -1.3976 10 1 6.5957 0.1456 -0.2541 11 1 6.3873 0.2205 -2.6693 12 1 6.4950 2.2819 -1.3972 13 7 1.6563 2.0975 1.2576 14 6 0.5065 2.9895 1.0572 15 1 -0.1443 2.6020 0.2733 16 6 0.9830 4.4169 0.7085 17 8 0.0501 5.2908 1.3854 18 6 -0.1847 4.6776 2.6716 19 6 -0.2795 3.1642 2.3760 20 1 0.1838 2.5869 3.1760 21 6 -1.7391 2.7448 2.1898 22 1 -0.3634 0.5599 -0.8617 23 1 -0.3634 -1.0263 -0.0539 24 1 -0.3633 0.4663 0.9158 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8176 -0.0563 -2.9593 28 1 1.4642 1.4159 1.9764 29 1 1.9943 4.5810 1.0810 30 1 0.9438 4.5775 -0.3689 31 1 -1.1194 5.0397 3.0998 32 1 0.6468 4.8809 3.3464 33 1 -1.7806 1.6979 1.8890 34 1 -2.2770 2.8746 3.1289 35 1 -2.1992 3.3629 1.4190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688003332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = -76.166044 kcal Electronic energy + Delta-G solvation = -15132.191248 eV Core-core repulsion = 12742.856852 eV Total energy + Delta-G solvation = -2389.334395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66271 -37.81218 -34.81452 -33.62149 -32.20763 -29.49732 -27.89095 -26.98978 -24.73585 -22.90828 -21.74079 -20.98425 -18.36316 -17.29560 -16.94683 -16.55091 -16.23625 -15.77552 -15.22718 -14.79336 -14.40926 -14.05651 -13.55225 -13.47085 -13.23583 -13.14253 -12.94956 -12.58946 -12.53184 -12.12442 -11.91939 -11.84740 -11.72586 -11.59790 -11.30813 -10.98555 -10.65055 -10.41438 -8.96049 -8.05915 -6.16914 1.43395 1.44314 1.51997 2.44839 3.05410 3.20330 3.58274 3.62573 3.99545 4.07342 4.34369 4.42596 4.49855 4.50703 4.59042 4.67841 4.77112 4.88204 4.93492 4.94540 5.01842 5.04565 5.14122 5.19060 5.35415 5.39419 5.53546 5.73752 5.85837 5.90999 6.35765 6.67960 6.87554 6.97118 7.52432 8.97521 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037398 B = 0.008965 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.531573 B = 3122.376148 C = 3602.809895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.226 3.774 4 H -0.006 1.006 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.061 3.939 15 H 0.043 0.957 16 C 0.058 3.942 17 O -0.397 6.397 18 C 0.050 3.950 19 C -0.125 4.125 20 H 0.095 0.905 21 C -0.137 4.137 22 H 0.033 0.967 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.259 0.741 28 H 0.335 0.665 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 3.240 8.652 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.306 5.306 14 C -0.050 4.050 15 H 0.061 0.939 16 C -0.020 4.020 17 O -0.316 6.316 18 C -0.026 4.026 19 C -0.144 4.144 20 H 0.114 0.886 21 C -0.195 4.195 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.872 3.862 8.335 12.098 hybrid contribution 0.587 -0.973 -0.691 1.330 sum -7.284 2.889 7.645 10.948 Atomic orbital electron populations 1.21783 0.96471 1.00805 1.00388 1.22023 0.94211 1.00384 1.01378 1.18981 0.93850 0.89496 0.85946 0.98768 1.21515 0.92928 1.35943 1.04668 0.92938 1.25671 1.02173 0.95389 0.95665 1.69988 1.36288 1.39935 1.09911 0.85666 0.80952 0.78122 0.77162 1.19742 1.21123 1.20175 1.60680 1.35630 1.24335 1.09978 1.22947 0.91068 0.93934 0.97020 0.93881 1.23403 0.92907 0.88754 0.96918 1.89059 1.64527 1.47946 1.30042 1.23584 1.02336 0.91110 0.85561 1.22719 0.97242 0.97735 0.96655 0.88631 1.21811 0.93828 1.01098 1.02732 0.94802 0.92764 0.92488 0.94393 0.91525 0.93143 0.84613 0.92311 0.90906 0.87000 0.91867 0.92657 0.90038 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.77 71.98 0.63 -4.43 16 2 C -0.14 -6.44 5.08 30.59 0.16 -6.28 16 3 C 0.23 11.08 2.11 44.17 0.09 11.17 16 4 H -0.01 -0.31 7.48 -2.39 -0.02 -0.33 16 5 C -0.51 -28.24 8.84 25.60 0.23 -28.01 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -52.91 11.29 21.45 0.24 -52.67 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 N -0.67 -27.21 5.88 -468.12 -2.75 -29.96 16 14 C 0.06 2.14 2.06 45.93 0.09 2.24 16 15 H 0.04 1.63 6.14 -2.38 -0.01 1.61 16 16 C 0.06 2.12 7.37 72.48 0.53 2.65 16 17 O -0.40 -13.18 11.65 -148.98 -1.74 -14.92 16 18 C 0.05 1.28 7.19 72.49 0.52 1.81 16 19 C -0.12 -3.26 3.39 -9.77 -0.03 -3.29 16 20 H 0.10 2.33 7.54 -2.39 -0.02 2.32 16 21 C -0.14 -3.01 8.94 71.98 0.64 -2.36 16 22 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 1.84 5.78 -2.39 -0.01 1.82 16 25 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 26 H 0.07 3.54 5.95 -2.39 -0.01 3.52 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.34 12.36 7.23 -89.69 -0.65 11.71 16 29 H 0.06 2.30 8.06 -2.38 -0.02 2.28 16 30 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.11 2.21 7.87 -2.39 -0.02 2.19 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.24 7.07 -2.39 -0.02 1.22 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -59.82 274.78 1.51 -58.32 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.41 Total: 18.57 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.31 Total: -25.57 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.51 Total: -82.63 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.74 Total: -14.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -59.82 1.51 -58.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688003332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.851 kcal (2) G-P(sol) polarization free energy of solvation -59.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds