Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99667 * 2 1 3 5 5 H 1.08997 * 110.56825 * 301.91691 * 4 2 1 6 6 C 1.54805 * 110.55502 * 179.07436 * 4 2 1 7 7 O 1.44426 * 104.80382 * 217.33738 * 6 4 2 8 8 C 1.44419 * 105.27390 * 40.58829 * 7 6 4 9 9 C 1.54475 * 104.80778 * 319.48896 * 8 7 6 10 10 H 1.09006 * 110.51058 * 265.19856 * 9 8 7 11 11 N 1.46504 * 110.51682 * 142.62127 * 9 8 7 12 12 C 1.46497 * 119.99656 * 307.30340 * 11 9 8 13 13 C 1.36934 * 120.00082 * 127.57305 * 11 9 8 14 14 H 1.07994 * 119.99984 * 143.92529 * 13 11 9 15 15 C 1.38814 * 119.99872 * 323.92551 * 13 11 9 16 16 N 1.31618 * 120.00621 * 353.19064 * 15 13 11 17 17 Si 1.86804 * 119.99789 * 173.18587 * 15 13 11 18 18 H 1.48500 * 109.47260 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47196 * 120.00174 * 17 15 13 20 20 H 1.48504 * 109.47223 * 240.00186 * 17 15 13 21 21 H 1.09004 * 109.47525 * 306.11493 * 1 2 3 22 22 H 1.09009 * 109.46960 * 66.10989 * 1 2 3 23 23 H 1.09001 * 109.47174 * 186.10693 * 1 2 3 24 24 H 1.08998 * 109.47305 * 240.00008 * 2 1 3 25 25 H 1.08998 * 109.47058 * 59.99856 * 3 2 1 26 26 H 1.09004 * 109.46714 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46976 * 299.99835 * 3 2 1 28 28 H 1.09005 * 110.30366 * 98.54073 * 6 4 2 29 29 H 1.08997 * 110.52895 * 336.25287 * 6 4 2 30 30 H 1.09003 * 110.37431 * 200.65687 * 8 7 6 31 31 H 1.09006 * 110.37257 * 78.31683 * 8 7 6 32 32 H 1.08999 * 109.46848 * 262.99206 * 12 11 9 33 33 H 1.09001 * 109.47416 * 22.99441 * 12 11 9 34 34 H 1.09000 * 109.46676 * 142.99219 * 12 11 9 35 35 H 0.97000 * 120.00494 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6589 -0.2414 2.1507 6 6 3.5875 -0.7561 1.2630 7 8 3.9225 -2.0496 1.8113 8 6 2.9811 -2.9699 1.2177 9 6 1.6350 -2.2120 1.2169 10 1 1.0517 -2.4685 2.1013 11 7 0.8776 -2.5119 -0.0007 12 6 1.5051 -2.3434 -1.3138 13 6 -0.4186 -2.9443 0.0883 14 1 -1.1432 -2.6340 -0.6499 15 6 -0.8011 -3.7816 1.1273 16 7 0.1053 -4.2678 1.9486 17 14 -2.6024 -4.2183 1.3600 18 1 -3.4136 -3.5484 0.3120 19 1 -2.7730 -5.6895 1.2523 20 1 -3.0526 -3.7647 2.7005 21 1 -0.3634 0.6057 0.8302 22 1 -0.3633 0.4162 -0.9397 23 1 -0.3633 -1.0218 0.1093 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 3.9781 0.0384 1.8989 29 1 3.9810 -0.6594 0.2512 30 1 2.9059 -3.8761 1.8188 31 1 3.2799 -3.2134 0.1981 32 1 1.2262 -1.3745 -1.7280 33 1 2.5887 -2.3950 -1.2079 34 1 1.1672 -3.1353 -1.9822 35 1 -0.1621 -4.8525 2.6749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688180807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -1.040048 kcal Electronic energy + Delta-G solvation = -15930.830353 eV Core-core repulsion = 13544.753665 eV Total energy + Delta-G solvation = -2386.076688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36661 -35.79729 -33.97238 -31.25547 -29.22686 -27.46180 -26.47421 -26.01313 -22.88187 -21.99662 -19.83917 -18.99010 -16.71008 -15.78775 -14.91706 -14.78904 -14.64486 -13.72860 -13.41348 -12.91651 -12.83231 -12.51965 -11.77465 -11.63201 -11.40935 -11.33469 -11.04984 -11.00415 -10.78503 -10.55751 -10.17259 -10.01371 -9.90538 -9.67713 -9.34093 -9.22454 -8.88847 -8.42497 -6.47627 -5.87074 -3.45954 3.31534 3.40220 3.41316 4.40329 4.81663 5.27927 5.44607 5.55604 5.61715 5.71263 5.86535 5.95282 6.04172 6.22647 6.29788 6.31376 6.44127 6.47888 6.52845 6.57325 6.72187 6.74472 6.80620 6.83911 6.92016 7.13911 7.25498 7.61123 7.67260 7.75660 7.84937 8.44449 9.14992 9.73372 10.29353 11.15844 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.012928 C = 0.010796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.485975 B = 2165.392122 C = 2593.019612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.141 4.141 5 H 0.065 0.935 6 C 0.051 3.949 7 O -0.394 6.394 8 C 0.038 3.962 9 C 0.168 3.832 10 H 0.119 0.881 11 N -0.578 5.578 12 C 0.106 3.894 13 C -0.259 4.259 14 H 0.069 0.931 15 C 0.012 3.988 16 N -0.896 5.896 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.288 1.288 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.136 0.864 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.023 0.977 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 6.252 -2.669 7.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.162 4.162 5 H 0.083 0.917 6 C -0.026 4.026 7 O -0.312 6.312 8 C -0.040 4.040 9 C 0.060 3.940 10 H 0.137 0.863 11 N -0.300 5.300 12 C -0.039 4.039 13 C -0.388 4.388 14 H 0.087 0.913 15 C -0.188 4.188 16 N -0.539 5.539 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.215 1.215 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.154 0.846 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.259 6.067 -2.398 7.292 hybrid contribution -0.966 -0.090 0.077 0.974 sum 2.293 5.977 -2.322 6.810 Atomic orbital electron populations 1.22590 0.94811 1.08038 0.98028 1.21480 0.97165 0.93414 0.98934 1.21978 0.99899 0.98204 1.00560 1.23230 0.94093 1.00697 0.98152 0.91694 1.23411 0.95491 0.86378 0.97282 1.89008 1.56176 1.18028 1.68029 1.23943 0.89203 0.93770 0.97050 1.21756 0.91577 0.87298 0.93375 0.86310 1.43736 1.11018 1.76205 0.99086 1.21496 0.95670 0.97824 0.88908 1.18985 0.85494 1.22558 1.11738 0.91343 1.25301 0.97761 0.96245 0.99457 1.69853 1.31842 1.33907 1.18255 0.86209 0.84682 0.78014 0.77804 1.20069 1.21513 1.21475 0.95503 0.95554 0.84594 0.88903 0.93683 0.93747 0.93744 0.91010 0.93572 0.88959 0.93768 0.95908 0.95072 0.95182 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 8.16 37.15 0.30 -3.16 16 2 C -0.09 -1.66 1.74 -90.62 -0.16 -1.82 16 3 C -0.15 -2.26 8.98 37.16 0.33 -1.93 16 4 C -0.14 -2.76 2.66 -88.88 -0.24 -3.00 16 5 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 6 C 0.05 0.94 6.13 38.11 0.23 1.17 16 7 O -0.39 -8.35 11.65 -35.23 -0.41 -8.76 16 8 C 0.04 0.84 7.14 37.93 0.27 1.11 16 9 C 0.17 3.84 2.40 -66.36 -0.16 3.68 16 10 H 0.12 3.14 5.71 -51.93 -0.30 2.84 16 11 N -0.58 -13.41 1.45 -171.69 -0.25 -13.66 16 12 C 0.11 2.14 8.19 59.85 0.49 2.63 16 13 C -0.26 -6.57 7.06 -15.06 -0.11 -6.67 16 14 H 0.07 1.73 7.64 -52.49 -0.40 1.33 16 15 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 16 N -0.90 -24.33 10.91 55.49 0.61 -23.73 16 17 Si 0.90 20.74 29.56 -169.99 -5.02 15.72 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.14 3.06 2.93 -51.93 -0.15 2.90 16 24 H 0.09 1.71 3.78 -51.93 -0.20 1.51 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.62 7.18 -51.93 -0.37 0.25 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 31 H 0.04 0.96 5.96 -51.93 -0.31 0.65 16 32 H 0.02 0.44 5.26 -51.93 -0.27 0.17 16 33 H 0.03 0.60 6.05 -51.93 -0.31 0.28 16 34 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 258.10 15.07 3.89 3.89 Total: -1.00 -26.25 258.10 -5.54 -31.78 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.23 Total: 2.51 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 0.88 Total: -7.75 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.36 Total: -37.39 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.41 Total: -8.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.25 -5.54 -31.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688180807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.743 kcal (2) G-P(sol) polarization free energy of solvation -26.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds