Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99667 * 2 1 3 5 5 H 1.08997 * 110.56825 * 301.91691 * 4 2 1 6 6 C 1.54805 * 110.55502 * 179.07436 * 4 2 1 7 7 O 1.44426 * 104.80382 * 217.33738 * 6 4 2 8 8 C 1.44419 * 105.27390 * 40.58829 * 7 6 4 9 9 C 1.54475 * 104.80778 * 319.48896 * 8 7 6 10 10 H 1.09006 * 110.51058 * 265.19856 * 9 8 7 11 11 N 1.46504 * 110.51682 * 142.62127 * 9 8 7 12 12 C 1.46497 * 119.99656 * 307.30340 * 11 9 8 13 13 C 1.36934 * 120.00082 * 127.57305 * 11 9 8 14 14 H 1.07994 * 119.99984 * 143.92529 * 13 11 9 15 15 C 1.38814 * 119.99872 * 323.92551 * 13 11 9 16 16 N 1.31618 * 120.00621 * 353.19064 * 15 13 11 17 17 Si 1.86804 * 119.99789 * 173.18587 * 15 13 11 18 18 H 1.48500 * 109.47260 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47196 * 120.00174 * 17 15 13 20 20 H 1.48504 * 109.47223 * 240.00186 * 17 15 13 21 21 H 1.09004 * 109.47525 * 306.11493 * 1 2 3 22 22 H 1.09009 * 109.46960 * 66.10989 * 1 2 3 23 23 H 1.09001 * 109.47174 * 186.10693 * 1 2 3 24 24 H 1.08998 * 109.47305 * 240.00008 * 2 1 3 25 25 H 1.08998 * 109.47058 * 59.99856 * 3 2 1 26 26 H 1.09004 * 109.46714 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46976 * 299.99835 * 3 2 1 28 28 H 1.09005 * 110.30366 * 98.54073 * 6 4 2 29 29 H 1.08997 * 110.52895 * 336.25287 * 6 4 2 30 30 H 1.09003 * 110.37431 * 200.65687 * 8 7 6 31 31 H 1.09006 * 110.37257 * 78.31683 * 8 7 6 32 32 H 1.08999 * 109.46848 * 262.99206 * 12 11 9 33 33 H 1.09001 * 109.47416 * 22.99441 * 12 11 9 34 34 H 1.09000 * 109.46676 * 142.99219 * 12 11 9 35 35 H 0.97000 * 120.00494 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6589 -0.2414 2.1507 6 6 3.5875 -0.7561 1.2630 7 8 3.9225 -2.0496 1.8113 8 6 2.9811 -2.9699 1.2177 9 6 1.6350 -2.2120 1.2169 10 1 1.0517 -2.4685 2.1013 11 7 0.8776 -2.5119 -0.0007 12 6 1.5051 -2.3434 -1.3138 13 6 -0.4186 -2.9443 0.0883 14 1 -1.1432 -2.6340 -0.6499 15 6 -0.8011 -3.7816 1.1273 16 7 0.1053 -4.2678 1.9486 17 14 -2.6024 -4.2183 1.3600 18 1 -3.4136 -3.5484 0.3120 19 1 -2.7730 -5.6895 1.2523 20 1 -3.0526 -3.7647 2.7005 21 1 -0.3634 0.6057 0.8302 22 1 -0.3633 0.4162 -0.9397 23 1 -0.3633 -1.0218 0.1093 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 3.9781 0.0384 1.8989 29 1 3.9810 -0.6594 0.2512 30 1 2.9059 -3.8761 1.8188 31 1 3.2799 -3.2134 0.1981 32 1 1.2262 -1.3745 -1.7280 33 1 2.5887 -2.3950 -1.2079 34 1 1.1672 -3.1353 -1.9822 35 1 -0.1621 -4.8525 2.6749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688180807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -15.823986 kcal Electronic energy + Delta-G solvation = -15931.471433 eV Core-core repulsion = 13544.753665 eV Total energy + Delta-G solvation = -2386.717767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.01263 -37.47784 -35.60621 -33.12643 -30.88665 -29.08872 -28.15405 -27.50990 -24.72232 -23.54042 -21.50511 -20.63008 -18.53528 -17.47597 -16.52638 -16.52140 -16.39690 -15.41917 -15.14869 -14.56028 -14.29940 -14.03305 -13.32008 -13.18967 -13.07390 -12.90493 -12.82050 -12.67661 -12.48416 -12.27451 -11.88918 -11.74493 -11.59838 -11.17001 -11.00041 -10.83963 -10.53675 -10.32231 -8.34004 -7.80850 -5.42630 1.46988 1.50800 1.58809 2.51160 3.17688 3.31923 3.81989 4.00555 4.06415 4.27014 4.45868 4.50148 4.54983 4.67514 4.70835 4.81453 4.95251 4.99728 5.04959 5.06074 5.16594 5.18527 5.28360 5.30900 5.36142 5.54164 5.66537 5.77002 5.83690 6.03971 6.20983 6.49571 7.21220 7.87771 8.38016 9.17977 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.012928 C = 0.010796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.485975 B = 2165.392122 C = 2593.019612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.135 4.135 5 H 0.056 0.944 6 C 0.053 3.947 7 O -0.405 6.405 8 C 0.048 3.952 9 C 0.166 3.834 10 H 0.079 0.921 11 N -0.587 5.587 12 C 0.108 3.892 13 C -0.254 4.254 14 H 0.068 0.932 15 C -0.038 4.038 16 N -0.923 5.923 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.295 1.295 21 H 0.024 0.976 22 H 0.038 0.962 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.024 0.976 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 7.936 -3.801 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.156 4.156 5 H 0.075 0.925 6 C -0.023 4.023 7 O -0.324 6.324 8 C -0.030 4.030 9 C 0.058 3.942 10 H 0.096 0.904 11 N -0.310 5.310 12 C -0.036 4.036 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.235 4.235 16 N -0.568 5.568 17 Si 0.788 3.212 18 H -0.190 1.190 19 H -0.221 1.221 20 H -0.222 1.222 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.124 0.876 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.797 7.772 -3.552 9.351 hybrid contribution -1.119 -0.559 0.408 1.316 sum 2.678 7.212 -3.144 8.311 Atomic orbital electron populations 1.22477 0.96110 1.06067 0.98625 1.21415 0.96002 0.95357 0.97765 1.21894 1.00930 0.95796 1.01358 1.23119 0.95352 0.98281 0.98842 0.92501 1.23594 0.94238 0.85582 0.98900 1.88993 1.55773 1.19178 1.68464 1.23684 0.89357 0.93205 0.96706 1.21560 0.91099 0.89670 0.91879 0.90354 1.43818 1.10606 1.76380 1.00189 1.21560 0.96139 0.98552 0.87316 1.19175 0.86646 1.21371 1.11128 0.91409 1.25904 1.00751 0.96960 0.99842 1.70015 1.33108 1.34885 1.18779 0.85329 0.81271 0.77198 0.77391 1.19024 1.22108 1.22160 0.95712 0.94269 0.87562 0.88906 0.93566 0.92071 0.92359 0.88388 0.91690 0.91484 0.93213 0.93993 0.93905 0.95691 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.53 8.16 71.98 0.59 -5.94 16 2 C -0.09 -2.91 1.74 -10.80 -0.02 -2.93 16 3 C -0.14 -3.75 8.98 71.98 0.65 -3.10 16 4 C -0.14 -5.07 2.66 -9.66 -0.03 -5.10 16 5 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 6 C 0.05 1.78 6.13 72.60 0.45 2.23 16 7 O -0.41 -16.62 11.65 -148.98 -1.74 -18.35 16 8 C 0.05 2.14 7.14 72.48 0.52 2.66 16 9 C 0.17 7.59 2.40 46.01 0.11 7.70 16 10 H 0.08 4.27 5.71 -2.38 -0.01 4.26 16 11 N -0.59 -26.99 1.45 -697.10 -1.01 -28.00 16 12 C 0.11 4.19 8.19 127.77 1.05 5.24 16 13 C -0.25 -12.88 7.06 84.03 0.59 -12.28 16 14 H 0.07 3.40 7.64 -2.91 -0.02 3.38 16 15 C -0.04 -2.00 5.13 84.86 0.44 -1.56 16 16 N -0.92 -51.66 10.91 21.65 0.24 -51.42 16 17 Si 0.96 43.29 29.56 68.60 2.03 45.32 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 22 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.11 4.69 2.93 -2.39 -0.01 4.68 16 24 H 0.09 3.10 3.78 -2.39 -0.01 3.09 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.41 7.18 -2.39 -0.02 1.40 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.06 1.96 7.70 -2.39 -0.02 1.95 16 30 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.05 2.13 5.96 -2.38 -0.01 2.11 16 32 H 0.04 1.50 5.26 -2.39 -0.01 1.48 16 33 H 0.04 1.55 6.05 -2.39 -0.01 1.53 16 34 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -55.91 258.10 4.92 -50.98 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.07 Total: 14.55 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.34 Total: -13.08 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -0.77 Total: -79.42 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.74 Total: -18.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -55.91 4.92 -50.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688180807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.160 kcal (2) G-P(sol) polarization free energy of solvation -55.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds