Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47054 * 120.00250 * 2 1 3 5 5 H 1.09006 * 110.45381 * 302.60494 * 4 2 1 6 6 C 1.54484 * 110.62952 * 65.28650 * 4 2 1 7 7 O 1.44427 * 104.79939 * 142.68553 * 6 4 2 8 8 C 1.44429 * 105.27507 * 319.48789 * 7 6 4 9 9 C 1.54476 * 104.80388 * 40.51428 * 8 7 6 10 10 H 1.09004 * 110.51387 * 217.37916 * 9 8 7 11 11 N 1.46500 * 110.51166 * 94.66468 * 9 8 7 12 12 C 1.46501 * 119.99980 * 301.45784 * 11 9 8 13 13 C 1.36936 * 119.99989 * 121.45218 * 11 9 8 14 14 H 1.07997 * 119.99834 * 22.60266 * 13 11 9 15 15 C 1.38815 * 120.00214 * 202.60188 * 13 11 9 16 16 N 1.31615 * 119.99460 * 11.48626 * 15 13 11 17 17 Si 1.86797 * 120.00166 * 191.48615 * 15 13 11 18 18 H 1.48501 * 109.46799 * 59.99775 * 17 15 13 19 19 H 1.48496 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46822 * 300.00189 * 17 15 13 21 21 H 1.09005 * 109.47291 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47332 * 299.99770 * 1 2 3 23 23 H 1.08998 * 109.46912 * 60.00327 * 1 2 3 24 24 H 1.09001 * 109.47128 * 240.00102 * 2 1 3 25 25 H 1.08993 * 109.47179 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47323 * 300.00243 * 3 2 1 27 27 H 1.09001 * 109.46971 * 60.00006 * 3 2 1 28 28 H 1.08997 * 110.37067 * 23.85145 * 6 4 2 29 29 H 1.08993 * 110.37128 * 261.51230 * 6 4 2 30 30 H 1.09001 * 110.37331 * 159.34795 * 8 7 6 31 31 H 1.09002 * 110.37303 * 281.57612 * 8 7 6 32 32 H 1.09004 * 109.47003 * 93.95644 * 12 11 9 33 33 H 1.08997 * 109.46956 * 213.95812 * 12 11 9 34 34 H 1.08999 * 109.47108 * 333.95820 * 12 11 9 35 35 H 0.97011 * 119.99702 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6481 -0.2475 2.1493 6 6 1.6515 -2.2160 1.2114 7 8 2.7844 -2.9062 1.7825 8 6 3.9470 -2.2368 1.2476 9 6 3.5848 -0.7353 1.2736 10 1 3.9852 -0.2305 0.3943 11 7 4.0846 -0.1079 2.4995 12 6 3.6532 -0.6085 3.8070 13 6 4.9550 0.9465 2.4232 14 1 4.9976 1.5477 1.5271 15 6 5.7826 1.2426 3.4977 16 7 5.8987 0.3896 4.4933 17 14 6.7312 2.8514 3.5305 18 1 5.7777 3.9891 3.4878 19 1 7.5363 2.9260 4.7760 20 1 7.6340 2.9177 2.3533 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.4887 -2.5398 0.1834 29 1 0.7586 -2.3913 1.8113 30 1 4.8174 -2.4281 1.8752 31 1 4.1374 -2.5652 0.2258 32 1 4.3773 -1.3358 4.1745 33 1 3.5840 0.2221 4.5093 34 1 2.6775 -1.0845 3.7099 35 1 6.4768 0.5966 5.2443 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688180810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = -34.087291 kcal Electronic energy + Delta-G solvation = -15451.857314 eV Core-core repulsion = 13064.347590 eV Total energy + Delta-G solvation = -2387.509724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30624 -35.29729 -34.77011 -31.27784 -28.72550 -28.01781 -26.66582 -25.81348 -22.91670 -22.30230 -20.20854 -18.89053 -16.82273 -15.80167 -15.19830 -15.01623 -14.50974 -13.78237 -13.52677 -13.11642 -12.77243 -12.47471 -12.18326 -11.91320 -11.63143 -11.48802 -10.94243 -10.88610 -10.74523 -10.47017 -10.35060 -10.25967 -10.12822 -10.00804 -9.76578 -9.69714 -9.14781 -8.48542 -6.69299 -5.68321 -3.14698 3.39639 3.45263 3.45879 4.50124 4.62064 5.06964 5.16413 5.29239 5.43667 5.54478 5.64165 5.70709 5.77966 5.91430 5.94423 6.07804 6.09477 6.18901 6.23332 6.28850 6.37536 6.47267 6.55883 6.73540 6.83629 6.90149 7.01290 7.45220 7.51677 7.81131 7.89377 8.43462 9.27828 9.91188 10.41590 11.35933 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.010721 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.830748 B = 2610.999510 C = 3144.481812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.136 4.136 5 H 0.086 0.914 6 C 0.051 3.949 7 O -0.379 6.379 8 C 0.023 3.977 9 C 0.155 3.845 10 H 0.077 0.923 11 N -0.587 5.587 12 C 0.167 3.833 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.906 5.906 17 Si 0.904 3.096 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.284 1.284 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.003 0.997 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -1.575 -7.875 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.201 4.201 4 C -0.157 4.157 5 H 0.105 0.895 6 C -0.026 4.026 7 O -0.298 6.298 8 C -0.056 4.056 9 C 0.045 3.955 10 H 0.095 0.905 11 N -0.307 5.307 12 C 0.023 3.977 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.551 5.551 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.210 1.210 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.244 -1.724 -7.525 11.295 hybrid contribution 0.602 0.989 -0.012 1.158 sum -7.642 -0.735 -7.537 10.758 Atomic orbital electron populations 1.21861 0.95897 1.01175 1.01360 1.21041 0.94925 0.96713 0.97332 1.21826 1.02187 0.95290 1.00748 1.23179 0.99023 0.94901 0.98583 0.89543 1.23352 0.90307 0.91652 0.97278 1.89077 1.15276 1.56012 1.69391 1.24213 0.89501 0.94573 0.97292 1.21716 0.90696 0.91496 0.91566 0.90533 1.43918 1.51374 1.35821 0.99638 1.20709 0.93488 0.97527 0.86004 1.19163 1.13462 1.04216 1.01635 0.91518 1.25026 0.98021 0.98294 0.98277 1.70082 1.40525 1.34220 1.10250 0.86352 0.79672 0.83687 0.76903 1.21134 1.21682 1.21007 0.93052 0.92756 0.93208 0.91849 0.91659 0.93848 0.92605 0.93390 0.90442 0.88821 0.93992 0.95458 0.94177 0.97893 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.03 37.16 0.34 -1.43 16 2 C -0.08 -1.17 2.26 -90.62 -0.20 -1.38 16 3 C -0.14 -2.18 8.94 37.15 0.33 -1.85 16 4 C -0.14 -2.35 1.80 -89.05 -0.16 -2.51 16 5 H 0.09 1.67 6.91 -51.93 -0.36 1.32 16 6 C 0.05 0.83 6.27 37.94 0.24 1.07 16 7 O -0.38 -7.51 11.27 -35.23 -0.40 -7.91 16 8 C 0.02 0.46 6.86 37.93 0.26 0.72 16 9 C 0.16 3.18 2.71 -66.36 -0.18 3.00 16 10 H 0.08 1.54 6.22 -51.93 -0.32 1.22 16 11 N -0.59 -14.64 2.82 -171.69 -0.48 -15.12 16 12 C 0.17 4.27 8.02 59.85 0.48 4.75 16 13 C -0.26 -6.91 9.62 -15.06 -0.14 -7.06 16 14 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 15 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 16 N -0.91 -26.61 10.61 55.49 0.59 -26.02 16 17 Si 0.90 21.87 29.57 -169.99 -5.03 16.84 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H 0.05 0.57 7.45 -51.93 -0.39 0.19 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 25 H 0.06 1.12 6.52 -51.93 -0.34 0.78 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.69 7.83 -51.93 -0.41 0.28 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 2.09 8.06 -51.93 -0.42 1.67 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.76 7.43 -51.93 -0.39 0.37 16 33 H 0.04 1.09 7.19 -51.93 -0.37 0.72 16 34 H 0.00 0.06 6.46 -51.93 -0.34 -0.27 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -29.18 273.40 -6.16 -35.35 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.83 Total: -2.53 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 0.87 Total: -4.72 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.10 Total: -41.14 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.40 Total: -7.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.18 -6.16 -35.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688180810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds