Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47054 * 120.00250 * 2 1 3 5 5 H 1.09006 * 110.45381 * 302.60494 * 4 2 1 6 6 C 1.54484 * 110.62952 * 65.28650 * 4 2 1 7 7 O 1.44427 * 104.79939 * 142.68553 * 6 4 2 8 8 C 1.44429 * 105.27507 * 319.48789 * 7 6 4 9 9 C 1.54476 * 104.80388 * 40.51428 * 8 7 6 10 10 H 1.09004 * 110.51387 * 217.37916 * 9 8 7 11 11 N 1.46500 * 110.51166 * 94.66468 * 9 8 7 12 12 C 1.46501 * 119.99980 * 301.45784 * 11 9 8 13 13 C 1.36936 * 119.99989 * 121.45218 * 11 9 8 14 14 H 1.07997 * 119.99834 * 22.60266 * 13 11 9 15 15 C 1.38815 * 120.00214 * 202.60188 * 13 11 9 16 16 N 1.31615 * 119.99460 * 11.48626 * 15 13 11 17 17 Si 1.86797 * 120.00166 * 191.48615 * 15 13 11 18 18 H 1.48501 * 109.46799 * 59.99775 * 17 15 13 19 19 H 1.48496 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46822 * 300.00189 * 17 15 13 21 21 H 1.09005 * 109.47291 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47332 * 299.99770 * 1 2 3 23 23 H 1.08998 * 109.46912 * 60.00327 * 1 2 3 24 24 H 1.09001 * 109.47128 * 240.00102 * 2 1 3 25 25 H 1.08993 * 109.47179 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47323 * 300.00243 * 3 2 1 27 27 H 1.09001 * 109.46971 * 60.00006 * 3 2 1 28 28 H 1.08997 * 110.37067 * 23.85145 * 6 4 2 29 29 H 1.08993 * 110.37128 * 261.51230 * 6 4 2 30 30 H 1.09001 * 110.37331 * 159.34795 * 8 7 6 31 31 H 1.09002 * 110.37303 * 281.57612 * 8 7 6 32 32 H 1.09004 * 109.47003 * 93.95644 * 12 11 9 33 33 H 1.08997 * 109.46956 * 213.95812 * 12 11 9 34 34 H 1.08999 * 109.47108 * 333.95820 * 12 11 9 35 35 H 0.97011 * 119.99702 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6481 -0.2475 2.1493 6 6 1.6515 -2.2160 1.2114 7 8 2.7844 -2.9062 1.7825 8 6 3.9470 -2.2368 1.2476 9 6 3.5848 -0.7353 1.2736 10 1 3.9852 -0.2305 0.3943 11 7 4.0846 -0.1079 2.4995 12 6 3.6532 -0.6085 3.8070 13 6 4.9550 0.9465 2.4232 14 1 4.9976 1.5477 1.5271 15 6 5.7826 1.2426 3.4977 16 7 5.8987 0.3896 4.4933 17 14 6.7312 2.8514 3.5305 18 1 5.7777 3.9891 3.4878 19 1 7.5363 2.9260 4.7760 20 1 7.6340 2.9177 2.3533 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.4887 -2.5398 0.1834 29 1 0.7586 -2.3913 1.8113 30 1 4.8174 -2.4281 1.8752 31 1 4.1374 -2.5652 0.2258 32 1 4.3773 -1.3358 4.1745 33 1 3.5840 0.2221 4.5093 34 1 2.6775 -1.0845 3.7099 35 1 6.4768 0.5966 5.2443 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688180810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = -52.104085 kcal Electronic energy + Delta-G solvation = -15452.638581 eV Core-core repulsion = 13064.347590 eV Total energy + Delta-G solvation = -2388.290990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80866 -36.87250 -36.39595 -33.23539 -30.27107 -29.55189 -27.98216 -27.73910 -24.82979 -23.63546 -21.72566 -20.36109 -18.82458 -17.41710 -16.80712 -16.56873 -16.15295 -15.40936 -15.01125 -14.76393 -14.23991 -13.91744 -13.84947 -13.26914 -13.15757 -12.91546 -12.78108 -12.52106 -12.42385 -12.23206 -12.11749 -11.85006 -11.80847 -11.43145 -11.38961 -11.19620 -10.70913 -10.51195 -8.73829 -7.80442 -5.28720 1.46043 1.48437 1.54876 2.50844 3.17926 3.32948 3.57518 3.84675 3.99315 4.12149 4.28892 4.39705 4.50229 4.51467 4.65291 4.83493 4.87648 4.88558 4.92173 4.96221 5.04632 5.12804 5.13938 5.28993 5.30616 5.40807 5.53455 5.61741 5.67869 5.72769 6.02198 6.33979 7.16223 7.88654 8.35058 9.22901 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.010721 C = 0.008902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.830748 B = 2610.999510 C = 3144.481812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.126 4.126 5 H 0.062 0.938 6 C 0.052 3.948 7 O -0.400 6.400 8 C 0.030 3.970 9 C 0.146 3.854 10 H 0.081 0.919 11 N -0.600 5.600 12 C 0.191 3.809 13 C -0.257 4.257 14 H 0.074 0.926 15 C -0.056 4.056 16 N -0.941 5.941 17 Si 0.968 3.032 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.074 0.926 32 H -0.005 1.005 33 H 0.012 0.988 34 H 0.022 0.978 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 -1.388 -10.059 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.147 4.147 5 H 0.080 0.920 6 C -0.025 4.025 7 O -0.319 6.319 8 C -0.049 4.049 9 C 0.038 3.962 10 H 0.099 0.901 11 N -0.322 5.322 12 C 0.046 3.954 13 C -0.388 4.388 14 H 0.092 0.908 15 C -0.251 4.251 16 N -0.588 5.588 17 Si 0.797 3.203 18 H -0.205 1.205 19 H -0.224 1.224 20 H -0.200 1.200 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.013 0.987 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.644 -1.543 -9.755 13.803 hybrid contribution 0.970 0.902 0.608 1.457 sum -8.674 -0.641 -9.147 12.622 Atomic orbital electron populations 1.21816 0.93696 1.02343 1.01960 1.21040 0.96681 0.95619 0.96172 1.21792 1.00572 0.96288 1.01143 1.23032 0.96091 0.96256 0.99294 0.91959 1.23576 0.89534 0.90149 0.99229 1.89057 1.16112 1.56463 1.70304 1.24018 0.88701 0.93961 0.98195 1.21978 0.92894 0.91657 0.89652 0.90138 1.44086 1.51342 1.36034 1.00746 1.20305 0.93407 0.95583 0.86108 1.19531 1.12910 1.04711 1.01604 0.90797 1.25812 0.99552 1.01444 0.98281 1.70264 1.41683 1.35999 1.10854 0.85323 0.78362 0.79976 0.76677 1.20493 1.22380 1.19961 0.91623 0.93525 0.91326 0.90134 0.94043 0.91284 0.94379 0.90306 0.88833 0.92228 0.90757 0.98652 0.96901 0.95961 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.03 71.98 0.65 -2.22 16 2 C -0.08 -1.96 2.26 -10.79 -0.02 -1.98 16 3 C -0.14 -4.00 8.94 71.98 0.64 -3.36 16 4 C -0.13 -4.12 1.80 -9.78 -0.02 -4.13 16 5 H 0.06 2.35 6.91 -2.38 -0.02 2.34 16 6 C 0.05 1.51 6.27 72.49 0.45 1.96 16 7 O -0.40 -15.20 11.27 -148.98 -1.68 -16.88 16 8 C 0.03 1.16 6.86 72.48 0.50 1.66 16 9 C 0.15 5.87 2.71 46.01 0.12 5.99 16 10 H 0.08 3.15 6.22 -2.38 -0.01 3.13 16 11 N -0.60 -30.39 2.82 -697.10 -1.97 -32.36 16 12 C 0.19 10.07 8.02 127.77 1.03 11.09 16 13 C -0.26 -14.09 9.62 84.03 0.81 -13.29 16 14 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.06 -3.19 5.12 84.86 0.43 -2.75 16 16 N -0.94 -57.11 10.61 21.65 0.23 -56.88 16 17 Si 0.97 45.53 29.57 68.60 2.03 47.56 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H 0.06 1.16 7.45 -2.38 -0.02 1.15 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 25 H 0.04 1.36 6.52 -2.39 -0.02 1.34 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.06 2.71 8.06 -2.39 -0.02 2.69 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.00 -0.28 7.43 -2.38 -0.02 -0.30 16 33 H 0.01 0.70 7.19 -2.39 -0.02 0.69 16 34 H 0.02 1.05 6.46 -2.39 -0.02 1.04 16 35 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -63.83 273.40 4.25 -59.58 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.04 Total: 6.01 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 4.60 Total: -7.03 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.74 Total: -89.24 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.68 Total: -16.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -63.83 4.25 -59.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688180810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.478 kcal (2) G-P(sol) polarization free energy of solvation -63.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds