Wall clock time and date at job start Mon Mar 30 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 H 1.08999 * 110.45591 * 59.29795 * 3 2 1 5 5 C 1.54479 * 110.50700 * 296.69480 * 3 2 1 6 6 O 1.44428 * 104.80146 * 217.23515 * 5 3 2 7 7 C 1.44427 * 105.27290 * 40.51714 * 6 5 3 8 8 C 1.54477 * 104.89868 * 319.43019 * 7 6 5 9 9 H 1.08999 * 110.51158 * 265.38454 * 8 7 6 10 10 N 1.46901 * 110.50991 * 142.67953 * 8 7 6 11 11 C 1.46902 * 110.99833 * 40.37200 * 10 8 7 12 12 C 1.46897 * 110.99956 * 164.32199 * 10 8 7 13 13 C 1.50708 * 109.47025 * 169.99858 * 12 10 8 14 14 H 1.07998 * 119.99830 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99660 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00374 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99890 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46671 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47251 * 119.99583 * 17 15 13 20 20 H 1.48497 * 109.47369 * 239.99854 * 17 15 13 21 21 H 1.09002 * 109.46946 * 300.00279 * 1 2 3 22 22 H 1.08998 * 109.47108 * 60.00060 * 1 2 3 23 23 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46946 * 239.99721 * 2 1 3 25 25 H 1.08998 * 109.47108 * 119.99939 * 2 1 3 26 26 H 1.09010 * 110.37033 * 98.41013 * 5 3 2 27 27 H 1.08994 * 110.37492 * 336.07451 * 5 3 2 28 28 H 1.08998 * 110.37172 * 78.31660 * 7 6 5 29 29 H 1.08997 * 110.36917 * 200.53961 * 7 6 5 30 30 H 1.08998 * 109.47331 * 63.76243 * 11 10 8 31 31 H 1.09004 * 109.46934 * 183.76053 * 11 10 8 32 32 H 1.09001 * 109.46878 * 303.75554 * 11 10 8 33 33 H 1.08998 * 109.47530 * 289.99974 * 12 10 8 34 34 H 1.09002 * 109.47140 * 50.00418 * 12 10 8 35 35 H 0.97002 * 119.99895 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6754 1.9755 0.8781 5 6 1.6076 2.1694 -1.2927 6 8 2.7281 3.0148 -1.6330 7 6 3.9018 2.2162 -1.3671 8 6 3.5869 1.4739 -0.0495 9 1 3.9860 2.0232 0.8032 10 7 4.1307 0.1097 -0.0847 11 6 5.4598 0.0888 -0.7099 12 6 4.1733 -0.4749 1.2623 13 6 4.4995 -1.9429 1.1627 14 1 4.6596 -2.3960 0.1955 15 6 4.5936 -2.7073 2.3063 16 7 4.3991 -2.1553 3.4841 17 14 4.9987 -4.5267 2.1830 18 1 5.1716 -4.8996 0.7560 19 1 6.2559 -4.8052 2.9227 20 1 3.8913 -5.3215 2.7722 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.7187 2.7732 -1.1093 27 1 1.4202 1.4488 -2.0887 28 1 4.0662 1.5028 -2.1746 29 1 4.7756 2.8557 -1.2429 30 1 6.1561 0.6672 -0.1027 31 1 5.8105 -0.9407 -0.7835 32 1 5.3990 0.5241 -1.7073 33 1 4.9390 0.0282 1.8528 34 1 3.2032 -0.3502 1.7434 35 1 4.4650 -2.6932 4.2886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688217465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:14 Heat of formation + Delta-G solvation = -40.815674 kcal Electronic energy + Delta-G solvation = -15222.471903 eV Core-core repulsion = 12834.670415 eV Total energy + Delta-G solvation = -2387.801488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.58578 -36.00679 -33.76446 -32.56371 -29.28310 -28.02888 -26.87283 -25.08101 -23.13472 -21.83378 -20.69918 -18.81442 -16.58931 -16.05448 -15.54153 -15.14677 -14.73781 -13.92814 -13.85871 -13.37493 -12.98406 -12.78609 -12.19975 -11.94175 -11.78574 -11.53409 -11.20819 -10.96561 -10.90580 -10.62284 -10.40846 -10.32469 -10.05762 -9.88364 -9.78582 -9.31920 -9.11341 -8.42977 -7.25974 -6.05442 -4.06535 3.28820 3.36690 3.41021 4.23919 4.41120 4.93609 5.00651 5.19081 5.30751 5.32257 5.55558 5.71008 5.73841 5.81671 5.89217 5.99115 6.06784 6.11850 6.21604 6.27372 6.33709 6.40502 6.60657 6.72344 6.89583 7.03721 7.09297 7.31088 7.45130 7.78387 8.06387 8.15448 8.51014 9.01565 9.57814 11.05328 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.009093 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.385372 B = 3078.706114 C = 3491.145541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.107 4.107 4 H 0.071 0.929 5 C 0.053 3.947 6 O -0.386 6.386 7 C 0.047 3.953 8 C 0.051 3.949 9 H 0.047 0.953 10 N -0.526 5.526 11 C 0.029 3.971 12 C 0.188 3.812 13 C -0.505 4.505 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.284 1.284 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.012 0.988 31 H 0.075 0.925 32 H 0.049 0.951 33 H -0.012 1.012 34 H 0.041 0.959 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 5.961 -7.340 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.127 4.127 4 H 0.090 0.910 5 C -0.023 4.023 6 O -0.304 6.304 7 C -0.030 4.030 8 C -0.058 4.058 9 H 0.064 0.936 10 N -0.251 5.251 11 C -0.119 4.119 12 C 0.063 3.937 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.006 0.994 34 H 0.059 0.941 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.103 5.857 -7.522 10.379 hybrid contribution 0.815 -0.687 0.790 1.327 sum -3.288 5.170 -6.732 9.102 Atomic orbital electron populations 1.21872 0.97668 1.01086 1.00436 1.21567 0.92952 0.94617 1.05525 1.22537 0.94714 0.97959 0.97462 0.91010 1.23503 0.89680 0.93126 0.96035 1.89040 1.15611 1.38100 1.87648 1.23665 0.88624 0.93853 0.96834 1.23010 0.95152 0.91239 0.96436 0.93551 1.62294 1.22584 1.15003 1.25221 1.22335 0.90080 1.02350 0.97139 1.19935 0.96783 0.94503 0.82483 1.21171 1.46989 0.93321 0.92859 0.91816 1.24981 0.95629 0.98685 0.95308 1.69968 1.50257 1.35994 0.97542 0.86473 0.77862 0.85142 0.78134 1.19675 1.21181 1.21036 0.93532 0.93808 0.93025 0.90795 0.88992 0.89961 0.92229 0.91192 0.89934 0.96965 0.90626 0.93193 0.99385 0.94123 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.72 37.15 0.36 -1.87 16 2 C -0.11 -1.92 4.24 -26.73 -0.11 -2.04 16 3 C -0.11 -1.79 3.06 -88.90 -0.27 -2.06 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.05 0.79 6.18 37.93 0.23 1.02 16 6 O -0.39 -6.35 11.65 -35.23 -0.41 -6.76 16 7 C 0.05 0.75 5.99 37.93 0.23 0.98 16 8 C 0.05 0.93 2.96 -65.99 -0.20 0.74 16 9 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 10 N -0.53 -10.86 3.34 -234.25 -0.78 -11.64 16 11 C 0.03 0.55 8.83 60.07 0.53 1.08 16 12 C 0.19 4.71 3.84 -4.97 -0.02 4.69 16 13 C -0.50 -13.70 8.51 -34.44 -0.29 -13.99 16 14 H 0.06 1.72 7.10 -52.49 -0.37 1.35 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.55 7.33 -51.93 -0.38 0.17 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.38 7.77 -51.93 -0.40 0.97 16 25 H 0.09 1.96 5.02 -51.93 -0.26 1.69 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.06 0.86 7.80 -51.93 -0.40 0.45 16 28 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 1.52 6.85 -51.93 -0.36 1.16 16 32 H 0.05 0.79 5.75 -51.93 -0.30 0.49 16 33 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 34 H 0.04 1.08 5.54 -51.93 -0.29 0.79 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -1.00 -28.57 270.79 -6.64 -35.21 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.61 Total: -1.70 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 0.36 Total: -10.01 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.05 Total: -37.11 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.41 Total: -6.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.57 -6.64 -35.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688217465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.608 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds