Wall clock time and date at job start Mon Mar 30 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47358 * 2 1 4 4 H 1.08999 * 110.45591 * 59.29795 * 3 2 1 5 5 C 1.54479 * 110.50700 * 296.69480 * 3 2 1 6 6 O 1.44428 * 104.80146 * 217.23515 * 5 3 2 7 7 C 1.44427 * 105.27290 * 40.51714 * 6 5 3 8 8 C 1.54477 * 104.89868 * 319.43019 * 7 6 5 9 9 H 1.08999 * 110.51158 * 265.38454 * 8 7 6 10 10 N 1.46901 * 110.50991 * 142.67953 * 8 7 6 11 11 C 1.46902 * 110.99833 * 40.37200 * 10 8 7 12 12 C 1.46897 * 110.99956 * 164.32199 * 10 8 7 13 13 C 1.50708 * 109.47025 * 169.99858 * 12 10 8 14 14 H 1.07998 * 119.99830 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99660 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00374 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99890 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46671 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47251 * 119.99583 * 17 15 13 20 20 H 1.48497 * 109.47369 * 239.99854 * 17 15 13 21 21 H 1.09002 * 109.46946 * 300.00279 * 1 2 3 22 22 H 1.08998 * 109.47108 * 60.00060 * 1 2 3 23 23 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46946 * 239.99721 * 2 1 3 25 25 H 1.08998 * 109.47108 * 119.99939 * 2 1 3 26 26 H 1.09010 * 110.37033 * 98.41013 * 5 3 2 27 27 H 1.08994 * 110.37492 * 336.07451 * 5 3 2 28 28 H 1.08998 * 110.37172 * 78.31660 * 7 6 5 29 29 H 1.08997 * 110.36917 * 200.53961 * 7 6 5 30 30 H 1.08998 * 109.47331 * 63.76243 * 11 10 8 31 31 H 1.09004 * 109.46934 * 183.76053 * 11 10 8 32 32 H 1.09001 * 109.46878 * 303.75554 * 11 10 8 33 33 H 1.08998 * 109.47530 * 289.99974 * 12 10 8 34 34 H 1.09002 * 109.47140 * 50.00418 * 12 10 8 35 35 H 0.97002 * 119.99895 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6754 1.9755 0.8781 5 6 1.6076 2.1694 -1.2927 6 8 2.7281 3.0148 -1.6330 7 6 3.9018 2.2162 -1.3671 8 6 3.5869 1.4739 -0.0495 9 1 3.9860 2.0232 0.8032 10 7 4.1307 0.1097 -0.0847 11 6 5.4598 0.0888 -0.7099 12 6 4.1733 -0.4749 1.2623 13 6 4.4995 -1.9429 1.1627 14 1 4.6596 -2.3960 0.1955 15 6 4.5936 -2.7073 2.3063 16 7 4.3991 -2.1553 3.4841 17 14 4.9987 -4.5267 2.1830 18 1 5.1716 -4.8996 0.7560 19 1 6.2559 -4.8052 2.9227 20 1 3.8913 -5.3215 2.7722 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.7187 2.7732 -1.1093 27 1 1.4202 1.4488 -2.0887 28 1 4.0662 1.5028 -2.1746 29 1 4.7756 2.8557 -1.2429 30 1 6.1561 0.6672 -0.1027 31 1 5.8105 -0.9407 -0.7835 32 1 5.3990 0.5241 -1.7073 33 1 4.9390 0.0282 1.8528 34 1 3.2032 -0.3502 1.7434 35 1 4.4650 -2.6932 4.2886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688217465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:14 Heat of formation + Delta-G solvation = -59.317724 kcal Electronic energy + Delta-G solvation = -15223.274212 eV Core-core repulsion = 12834.670415 eV Total energy + Delta-G solvation = -2388.603797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96635 -37.59946 -35.16053 -34.60595 -30.86841 -29.48029 -28.43440 -26.86737 -24.44295 -23.61072 -22.18745 -20.29387 -18.54344 -17.48712 -17.01882 -16.64336 -16.47881 -15.57453 -15.35706 -14.85930 -14.67621 -14.12377 -13.84187 -13.52095 -13.28792 -12.97011 -12.85304 -12.75375 -12.37475 -12.31911 -12.12762 -11.90869 -11.53264 -11.41241 -11.35003 -11.00313 -10.67185 -10.52356 -8.99733 -8.19374 -6.28117 1.40392 1.41515 1.54335 2.40131 2.95205 3.14037 3.37596 3.66078 3.88713 3.97964 4.23815 4.37050 4.46880 4.53607 4.60997 4.64863 4.68790 4.80623 4.85831 4.91841 4.97163 5.07124 5.16565 5.22656 5.28500 5.36909 5.55348 5.65938 5.74903 5.85699 6.08511 6.31948 6.63685 6.88351 7.41188 8.91862 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.009093 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.385372 B = 3078.706114 C = 3491.145541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.109 4.109 4 H 0.071 0.929 5 C 0.060 3.940 6 O -0.392 6.392 7 C 0.056 3.944 8 C 0.042 3.958 9 H 0.029 0.971 10 N -0.525 5.525 11 C 0.030 3.970 12 C 0.206 3.794 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.280 1.280 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.008 0.992 31 H 0.060 0.940 32 H 0.087 0.913 33 H -0.049 1.049 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 6.026 -9.075 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.128 4.128 4 H 0.089 0.911 5 C -0.017 4.017 6 O -0.311 6.311 7 C -0.020 4.020 8 C -0.068 4.068 9 H 0.047 0.953 10 N -0.250 5.250 11 C -0.118 4.118 12 C 0.080 3.920 13 C -0.553 4.553 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.206 1.206 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.027 0.973 31 H 0.078 0.922 32 H 0.105 0.895 33 H -0.031 1.031 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.689 5.933 -9.279 11.970 hybrid contribution 0.991 -0.656 1.329 1.783 sum -3.699 5.277 -7.950 10.233 Atomic orbital electron populations 1.21808 0.95022 1.01621 1.01938 1.21370 0.95251 0.94580 1.02624 1.22552 0.93578 0.97675 0.98979 0.91098 1.23568 0.89986 0.93371 0.94752 1.89043 1.15989 1.38476 1.87555 1.23614 0.89220 0.94001 0.95200 1.23140 0.96270 0.89806 0.97546 0.95301 1.62211 1.23699 1.16734 1.22314 1.22381 0.88986 1.01708 0.98770 1.19569 0.94349 0.93821 0.84279 1.21451 1.46589 0.94374 0.92864 0.91846 1.25861 0.95449 1.03391 0.94909 1.70095 1.51348 1.37812 0.98311 0.85393 0.77636 0.79425 0.78523 1.18650 1.20734 1.20565 0.93065 0.91188 0.93057 0.91962 0.93426 0.87387 0.91239 0.90379 0.88342 0.97344 0.92155 0.89508 1.03124 0.95994 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.72 71.98 0.70 -3.32 16 2 C -0.10 -3.52 4.24 30.59 0.13 -3.39 16 3 C -0.11 -3.52 3.06 -9.68 -0.03 -3.55 16 4 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 5 C 0.06 1.58 6.18 72.48 0.45 2.03 16 6 O -0.39 -11.75 11.65 -148.98 -1.74 -13.49 16 7 C 0.06 1.66 5.99 72.48 0.43 2.10 16 8 C 0.04 1.51 2.96 46.03 0.14 1.65 16 9 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 10 N -0.52 -21.90 3.34 -895.03 -2.99 -24.89 16 11 C 0.03 1.10 8.83 127.69 1.13 2.22 16 12 C 0.21 10.75 3.84 85.56 0.33 11.08 16 13 C -0.51 -28.54 8.51 25.60 0.22 -28.32 16 14 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 15 C 0.00 0.09 5.46 84.65 0.46 0.56 16 16 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 17 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.07 1.56 7.33 -2.39 -0.02 1.54 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 2.29 7.77 -2.39 -0.02 2.27 16 25 H 0.05 2.10 5.02 -2.39 -0.01 2.09 16 26 H 0.11 2.35 8.14 -2.38 -0.02 2.34 16 27 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 28 H 0.08 2.20 6.43 -2.39 -0.02 2.18 16 29 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 2.41 6.85 -2.39 -0.02 2.39 16 32 H 0.09 2.56 5.75 -2.39 -0.01 2.55 16 33 H -0.05 -2.86 8.12 -2.39 -0.02 -2.88 16 34 H 0.02 1.24 5.54 -2.39 -0.01 1.22 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -62.13 270.79 2.59 -59.54 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.05 Total: 7.45 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.95 Total: -18.95 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.70 Total: -80.59 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.74 Total: -13.49 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.13 2.59 -59.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688217465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.217 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds