Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 O 1.46299 * 110.99809 * 60.00014 * 13 3 2 15 15 C 1.42902 * 113.99727 * 180.02562 * 14 13 3 16 16 C 1.52998 * 109.46890 * 180.02562 * 15 14 13 17 17 C 1.53786 * 113.61179 * 274.13517 * 16 15 14 18 18 C 1.53954 * 87.01905 * 220.04806 * 17 16 15 19 19 C 1.53782 * 87.11126 * 25.36667 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.00899 * 110.99816 * 183.95423 * 13 3 2 27 27 H 1.08999 * 109.47220 * 300.00241 * 15 14 13 28 28 H 1.09005 * 109.46911 * 60.00358 * 15 14 13 29 29 H 1.08997 * 112.85368 * 45.33132 * 16 15 14 30 30 H 1.08997 * 113.61558 * 334.56978 * 17 16 15 31 31 H 1.09005 * 113.61327 * 105.47721 * 17 16 15 32 32 H 1.09006 * 113.54021 * 270.81349 * 18 17 16 33 33 H 1.09006 * 113.66580 * 139.93345 * 18 17 16 34 34 H 1.08998 * 113.61207 * 220.09007 * 19 18 17 35 35 H 1.08999 * 113.69258 * 89.19523 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6515 2.0992 1.2553 14 8 2.2181 1.4013 2.4095 15 6 1.8788 1.9879 3.6676 16 6 2.5223 1.1807 4.7968 17 6 1.6780 -0.0207 5.2537 18 6 2.0914 0.3384 6.6925 19 6 2.2874 1.7798 6.1935 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8292 -0.0604 -2.9503 26 1 1.9205 3.0717 1.2529 27 1 2.2450 3.0140 3.7005 28 1 0.7956 1.9845 3.7896 29 1 3.5647 0.9315 4.5982 30 1 0.6113 0.0976 5.0634 31 1 2.0657 -0.9812 4.9140 32 1 3.0159 -0.1423 7.0127 33 1 1.2851 0.2336 7.4185 34 1 3.1662 2.2708 6.6114 35 1 1.3884 2.3924 6.2603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688488696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = 2.634060 kcal Electronic energy + Delta-G solvation = -14643.598742 eV Core-core repulsion = 12257.681376 eV Total energy + Delta-G solvation = -2385.917366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.71578 -36.14513 -34.18542 -31.60661 -29.60534 -27.47146 -25.60326 -25.38914 -22.62482 -22.25848 -19.45844 -19.10539 -16.52302 -16.22262 -15.32140 -15.08060 -14.58027 -14.23380 -13.43615 -13.04140 -12.76484 -12.33611 -11.99893 -11.85496 -11.57508 -11.29586 -11.17663 -11.04865 -10.74139 -10.39054 -10.38086 -10.18291 -9.99173 -9.66787 -9.55228 -9.40753 -8.93665 -8.35814 -7.47207 -5.98765 -4.09593 3.29584 3.35986 3.39279 3.81820 4.42492 4.74998 4.80513 4.92420 5.05054 5.27852 5.66636 5.73764 5.82958 5.85796 5.93612 5.94184 6.16408 6.18241 6.30370 6.41300 6.48281 6.54206 6.67538 6.73231 7.18198 7.19887 7.39151 7.58634 7.78322 7.89277 8.10725 8.34438 8.51471 8.95960 9.56195 11.02463 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.008066 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.877298 B = 3470.351513 C = 4001.118026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.205 3.795 4 H 0.058 0.942 5 C -0.536 4.536 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.501 5.501 14 O -0.241 6.241 15 C 0.070 3.930 16 C -0.105 4.105 17 C -0.131 4.131 18 C -0.144 4.144 19 C -0.132 4.132 20 H 0.037 0.963 21 H 0.046 0.954 22 H 0.026 0.974 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.312 0.688 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 1.553 12.049 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.097 3.903 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.170 5.170 14 O -0.248 6.248 15 C -0.008 4.008 16 C -0.125 4.125 17 C -0.169 4.169 18 C -0.181 4.181 19 C -0.170 4.170 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.744 0.932 11.882 12.493 hybrid contribution 1.975 0.478 -0.260 2.049 sum -1.769 1.410 11.623 11.841 Atomic orbital electron populations 1.21723 0.99058 0.98557 1.00225 1.21428 0.91941 0.98667 1.02272 1.19550 0.94308 0.92886 0.83584 0.92463 1.21702 0.92289 1.38311 1.05194 0.92552 1.24932 0.98123 0.95014 0.95654 1.69873 1.34850 1.38484 1.09493 0.86595 0.85913 0.78420 0.77054 1.20676 1.21195 1.20095 1.67245 1.50165 1.03169 0.96448 1.90923 1.75086 1.48214 1.10555 1.22236 0.98024 0.95532 0.85026 1.22507 1.00652 0.96639 0.92706 1.22944 1.00138 0.98693 0.95082 1.22850 1.01328 0.96812 0.97105 1.22888 1.01744 0.96588 0.95796 0.94414 0.93500 0.95482 0.94133 0.89150 0.92854 0.87498 0.94747 0.93789 0.88795 0.90098 0.91408 0.90427 0.91730 0.91639 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.80 37.16 0.36 -2.59 16 2 C -0.10 -2.63 5.24 -26.74 -0.14 -2.77 16 3 C 0.20 5.24 2.54 -68.86 -0.17 5.07 16 4 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 5 C -0.54 -15.01 8.35 -34.44 -0.29 -15.30 16 6 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 7 C 0.06 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -25.43 11.30 55.43 0.63 -24.81 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.50 -11.18 6.56 -5.65 -0.04 -11.21 16 14 O -0.24 -5.34 9.89 -13.92 -0.14 -5.48 16 15 C 0.07 1.20 6.21 37.16 0.23 1.43 16 16 C -0.11 -1.54 4.00 -89.80 -0.36 -1.90 16 17 C -0.13 -1.76 7.65 -25.83 -0.20 -1.96 16 18 C -0.14 -1.57 8.09 -25.83 -0.21 -1.78 16 19 C -0.13 -1.52 7.65 -25.92 -0.20 -1.72 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 24 H 0.09 2.49 5.95 -51.93 -0.31 2.18 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.31 6.49 8.99 -39.29 -0.35 6.13 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.72 7.88 -51.93 -0.41 0.31 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 LS Contribution 286.85 15.07 4.32 4.32 Total: -1.00 -28.96 286.85 -7.35 -36.32 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.04 Total: 3.96 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -1.07 Total: -19.80 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.59 Total: -36.02 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.14 Total: -5.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.96 -7.35 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688488696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds