Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 O 1.46299 * 110.99809 * 60.00014 * 13 3 2 15 15 C 1.42902 * 113.99727 * 180.02562 * 14 13 3 16 16 C 1.52998 * 109.46890 * 180.02562 * 15 14 13 17 17 C 1.53786 * 113.61179 * 274.13517 * 16 15 14 18 18 C 1.53954 * 87.01905 * 220.04806 * 17 16 15 19 19 C 1.53782 * 87.11126 * 25.36667 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 26 26 H 1.00899 * 110.99816 * 183.95423 * 13 3 2 27 27 H 1.08999 * 109.47220 * 300.00241 * 15 14 13 28 28 H 1.09005 * 109.46911 * 60.00358 * 15 14 13 29 29 H 1.08997 * 112.85368 * 45.33132 * 16 15 14 30 30 H 1.08997 * 113.61558 * 334.56978 * 17 16 15 31 31 H 1.09005 * 113.61327 * 105.47721 * 17 16 15 32 32 H 1.09006 * 113.54021 * 270.81349 * 18 17 16 33 33 H 1.09006 * 113.66580 * 139.93345 * 18 17 16 34 34 H 1.08998 * 113.61207 * 220.09007 * 19 18 17 35 35 H 1.08999 * 113.69258 * 89.19523 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6515 2.0992 1.2553 14 8 2.2181 1.4013 2.4095 15 6 1.8788 1.9879 3.6676 16 6 2.5223 1.1807 4.7968 17 6 1.6780 -0.0207 5.2537 18 6 2.0914 0.3384 6.6925 19 6 2.2874 1.7798 6.1935 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8292 -0.0604 -2.9503 26 1 1.9205 3.0717 1.2529 27 1 2.2450 3.0140 3.7005 28 1 0.7956 1.9845 3.7896 29 1 3.5647 0.9315 4.5982 30 1 0.6113 0.0976 5.0634 31 1 2.0657 -0.9812 4.9140 32 1 3.0159 -0.1423 7.0127 33 1 1.2851 0.2336 7.4185 34 1 3.1662 2.2708 6.6114 35 1 1.3884 2.3924 6.2603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688488696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -14.227126 kcal Electronic energy + Delta-G solvation = -14644.329898 eV Core-core repulsion = 12257.681376 eV Total energy + Delta-G solvation = -2386.648522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80380 -37.93642 -35.99992 -33.66655 -31.35244 -28.91812 -27.50995 -26.43359 -24.58448 -23.42807 -21.34934 -20.24840 -18.61944 -17.87396 -16.94406 -16.48237 -16.03470 -15.80981 -15.02187 -14.84762 -14.35478 -13.67639 -13.52155 -13.29772 -13.24748 -13.08266 -12.77519 -12.69456 -12.51807 -12.21199 -11.66700 -11.56263 -11.40899 -11.37064 -11.20527 -11.12112 -10.69076 -10.48514 -9.32644 -8.10761 -6.30331 1.35782 1.37338 1.46749 2.18564 2.38538 3.11237 3.72531 3.77604 3.89212 4.00882 4.43256 4.49643 4.59847 4.68865 4.71001 4.77931 4.87099 4.88622 4.90112 5.00674 5.10318 5.14021 5.18761 5.37737 5.38479 5.46634 5.59167 5.61619 5.71236 5.95901 6.01420 6.28942 6.73679 6.81861 7.38378 8.87802 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.008066 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.877298 B = 3470.351513 C = 4001.118026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C 0.207 3.793 4 H 0.039 0.961 5 C -0.554 4.554 6 H 0.043 0.957 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.277 1.277 12 H -0.273 1.273 13 N -0.493 5.493 14 O -0.267 6.267 15 C 0.066 3.934 16 C -0.117 4.117 17 C -0.138 4.138 18 C -0.130 4.130 19 C -0.119 4.119 20 H 0.040 0.960 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.022 0.978 24 H 0.064 0.936 25 H 0.264 0.736 26 H 0.320 0.680 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 1.823 13.454 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 C 0.099 3.901 4 H 0.057 0.943 5 C -0.593 4.593 6 H 0.062 0.938 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.202 1.202 12 H -0.198 1.198 13 N -0.161 5.161 14 O -0.275 6.275 15 C -0.012 4.012 16 C -0.137 4.137 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.157 4.157 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.133 0.867 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.790 1.216 13.296 13.879 hybrid contribution 1.965 0.405 -0.649 2.109 sum -1.825 1.622 12.647 12.881 Atomic orbital electron populations 1.21581 0.96071 1.00026 1.00664 1.21250 0.94552 0.97810 0.99938 1.19346 0.93024 0.93146 0.84621 0.94330 1.21913 0.93661 1.38638 1.05102 0.93826 1.25644 1.02344 0.94654 0.95364 1.69977 1.36424 1.38697 1.09790 0.85645 0.80822 0.78294 0.77375 1.20579 1.20190 1.19759 1.67069 1.49841 1.03327 0.95870 1.90897 1.75547 1.49166 1.11859 1.22529 0.98857 0.96306 0.83480 1.22613 0.99671 0.97838 0.93573 1.22999 0.99915 0.97467 0.97185 1.22806 1.02224 0.96012 0.95734 1.22872 1.02823 0.97175 0.92827 0.94074 0.92835 0.93519 0.95924 0.91783 0.92642 0.86678 0.93902 0.92959 0.90528 0.89959 0.92783 0.89779 0.89735 0.90443 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.80 71.98 0.71 -4.58 16 2 C -0.10 -4.93 5.24 30.59 0.16 -4.77 16 3 C 0.21 10.79 2.54 44.16 0.11 10.90 16 4 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.55 -31.50 8.35 25.60 0.21 -31.29 16 6 H 0.04 2.53 7.75 -2.91 -0.02 2.51 16 7 C 0.02 1.13 5.29 84.65 0.45 1.57 16 8 N -0.91 -52.59 11.30 21.45 0.24 -52.35 16 9 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.49 -22.03 6.56 -171.79 -1.13 -23.16 16 14 O -0.27 -11.84 9.89 -50.16 -0.50 -12.33 16 15 C 0.07 2.19 6.21 71.98 0.45 2.64 16 16 C -0.12 -3.31 4.00 -10.27 -0.04 -3.35 16 17 C -0.14 -3.55 7.65 31.18 0.24 -3.31 16 18 C -0.13 -2.50 8.09 31.18 0.25 -2.25 16 19 C -0.12 -2.42 7.65 31.12 0.24 -2.18 16 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.05 2.15 7.75 -2.39 -0.02 2.13 16 22 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.02 1.18 7.50 -2.39 -0.02 1.17 16 24 H 0.06 3.59 5.95 -2.39 -0.01 3.58 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.32 13.29 8.99 -89.69 -0.81 12.49 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.64 7.88 -2.38 -0.02 1.62 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.07 7.92 -2.39 -0.02 2.05 16 31 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -61.54 286.85 3.66 -57.88 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.24 Total: 19.86 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.77 Total: -36.61 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -0.89 Total: -75.51 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.50 Total: -12.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -61.54 3.66 -57.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688488696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.650 kcal (2) G-P(sol) polarization free energy of solvation -61.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds