Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 H 1.09000 * 110.33139 * 304.20334 * 3 2 1 5 5 C 1.54472 * 110.37123 * 181.83610 * 3 2 1 6 6 C 1.54513 * 104.06289 * 217.18973 * 5 3 2 7 7 H 1.08992 * 110.63219 * 118.70283 * 6 5 3 8 8 N 1.46899 * 110.51156 * 241.35495 * 6 5 3 9 9 C 1.46896 * 111.00202 * 201.09326 * 8 6 5 10 10 H 1.09001 * 109.46987 * 35.00186 * 9 8 6 11 11 C 1.53002 * 109.47273 * 275.00191 * 9 8 6 12 12 C 1.50703 * 109.47468 * 154.99858 * 9 8 6 13 13 H 1.07998 * 119.99947 * 95.30904 * 12 9 8 14 14 C 1.37875 * 119.99808 * 275.31238 * 12 9 8 15 15 N 1.31517 * 120.00314 * 355.18007 * 14 12 9 16 16 Si 1.86806 * 119.99620 * 175.18040 * 14 12 9 17 17 H 1.48492 * 109.47347 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47171 * 120.00305 * 16 14 12 19 19 H 1.48507 * 109.46659 * 240.00110 * 16 14 12 20 20 C 1.54477 * 104.05972 * 359.97438 * 6 5 3 21 21 O 1.44422 * 110.37280 * 66.45237 * 3 2 1 22 22 H 1.09001 * 109.47090 * 60.00467 * 1 2 3 23 23 H 1.09003 * 109.47451 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47391 * 300.00436 * 1 2 3 25 25 H 1.09001 * 109.46775 * 239.99970 * 2 1 3 26 26 H 1.08996 * 109.46971 * 119.99983 * 2 1 3 27 27 H 1.09004 * 110.51395 * 98.54550 * 5 3 2 28 28 H 1.09001 * 110.51565 * 335.82831 * 5 3 2 29 29 H 1.00904 * 110.99953 * 77.13778 * 8 6 5 30 30 H 1.08994 * 109.47486 * 175.26540 * 11 9 8 31 31 H 1.09004 * 109.46675 * 295.25921 * 11 9 8 32 32 H 1.08997 * 109.47162 * 55.26291 * 11 9 8 33 33 H 0.96998 * 119.99559 * 5.15343 * 15 14 12 34 34 H 1.09003 * 110.37458 * 142.81393 * 20 6 5 35 35 H 1.09002 * 110.37558 * 265.14795 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6245 1.9911 -0.8453 5 6 3.5838 1.4670 -0.0464 6 6 3.9678 2.6571 0.8611 7 1 4.5674 2.3181 1.7058 8 7 4.6938 3.6771 0.0927 9 6 5.4842 4.5410 0.9798 10 1 5.8669 3.9525 1.8136 11 6 4.5991 5.6684 1.5150 12 6 6.6378 5.1305 0.2098 13 1 6.5470 6.1119 -0.2318 14 6 7.8091 4.4169 0.0691 15 7 7.9549 3.2642 0.6852 16 14 9.1890 5.0875 -0.9966 17 1 8.7781 6.3917 -1.5756 18 1 10.4075 5.2748 -0.1687 19 1 9.4780 4.1287 -2.0931 20 6 2.6105 3.2112 1.3479 21 8 1.6976 2.0968 1.2411 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9327 1.6356 -1.0652 28 1 3.9927 0.5374 0.3495 29 1 4.0607 4.2224 -0.4730 30 1 5.1612 6.2598 2.2377 31 1 4.2848 6.3068 0.6892 32 1 3.7207 5.2420 1.9994 33 1 7.2125 2.8801 1.1774 34 1 2.6851 3.5421 2.3838 35 1 2.2845 4.0320 0.7091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688513484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -83.086415 kcal Electronic energy + Delta-G solvation = -14837.389467 eV Core-core repulsion = 12447.754982 eV Total energy + Delta-G solvation = -2389.634485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78015 -37.66311 -34.66373 -34.28752 -32.24688 -29.56527 -28.18838 -26.48409 -24.56259 -22.69979 -22.17749 -21.62614 -18.89379 -17.56088 -16.94339 -16.53226 -15.74056 -15.62433 -15.27766 -14.72597 -14.47465 -14.12206 -14.00833 -13.81680 -13.45568 -12.92123 -12.74508 -12.58022 -12.43843 -12.38863 -11.92947 -11.86528 -11.77120 -11.61511 -11.54194 -10.81000 -10.65249 -10.41890 -8.93901 -8.50265 -6.26093 1.56066 1.65055 1.80567 2.60959 2.84699 3.20372 3.64929 3.72488 3.86736 3.98944 4.08518 4.18252 4.33799 4.40342 4.46781 4.54719 4.62980 4.69141 4.72388 4.81750 4.93899 4.99265 5.07945 5.11607 5.17834 5.20847 5.29465 5.41842 5.83210 6.01559 6.24362 6.55999 6.79512 6.83939 7.60303 8.87059 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048561 B = 0.007153 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.450738 B = 3913.575169 C = 4263.858638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.073 0.927 5 C -0.137 4.137 6 C 0.054 3.946 7 H 0.056 0.944 8 N -0.673 5.673 9 C 0.188 3.812 10 H 0.009 0.991 11 C -0.157 4.157 12 C -0.595 4.595 13 H 0.041 0.959 14 C -0.018 4.018 15 N -0.932 5.932 16 Si 1.118 2.882 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.028 3.972 21 O -0.386 6.386 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.329 0.671 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.259 0.741 34 H 0.087 0.913 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 -3.420 -1.932 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.090 0.910 5 C -0.175 4.175 6 C -0.057 4.057 7 H 0.074 0.926 8 N -0.304 5.304 9 C 0.081 3.919 10 H 0.027 0.973 11 C -0.216 4.216 12 C -0.634 4.634 13 H 0.060 0.940 14 C -0.218 4.218 15 N -0.570 5.570 16 Si 0.941 3.059 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.211 1.211 20 C -0.050 4.050 21 O -0.304 6.304 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.366 -4.183 -2.404 11.434 hybrid contribution -1.875 0.915 1.034 2.329 sum -12.241 -3.268 -1.370 12.743 Atomic orbital electron populations 1.21691 0.94479 1.02281 1.01819 1.21613 0.97289 0.93196 1.03187 1.23169 0.93052 0.95102 0.86910 0.90952 1.22954 0.95724 0.97856 1.01005 1.22942 0.93078 0.94114 0.95583 0.92559 1.61225 1.26555 1.17931 1.24739 1.19300 0.91617 0.89617 0.91352 0.97278 1.22387 0.98984 0.99819 1.00388 1.22228 1.00272 1.03175 1.37766 0.94040 1.27085 1.02827 0.94886 0.97051 1.70810 1.34455 1.19819 1.31878 0.82924 0.72957 0.75218 0.74777 1.19860 1.20846 1.21065 1.24281 0.89093 0.89701 1.01955 1.89059 1.56933 1.43159 1.41298 0.92278 0.91248 0.93456 0.89160 0.91778 0.90288 0.91028 0.85237 0.93719 0.93230 0.93027 0.93041 0.89511 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.83 71.98 0.71 -2.13 16 2 C -0.12 -2.58 5.57 30.59 0.17 -2.41 16 3 C 0.08 2.08 3.27 31.09 0.10 2.18 16 4 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.14 -4.48 6.42 31.61 0.20 -4.28 16 6 C 0.05 2.05 3.42 45.93 0.16 2.21 16 7 H 0.06 2.40 7.51 -2.39 -0.02 2.38 16 8 N -0.67 -29.33 6.00 -468.12 -2.81 -32.14 16 9 C 0.19 9.20 2.30 44.17 0.10 9.30 16 10 H 0.01 0.50 6.01 -2.39 -0.01 0.49 16 11 C -0.16 -6.33 9.03 71.98 0.65 -5.68 16 12 C -0.60 -33.02 8.64 25.60 0.22 -32.80 16 13 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 14 C -0.02 -1.05 5.45 84.65 0.46 -0.58 16 15 N -0.93 -57.13 13.63 21.45 0.29 -56.84 16 16 Si 1.12 50.81 29.91 68.60 2.05 52.86 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 C 0.03 0.92 5.61 72.48 0.41 1.33 16 21 O -0.39 -12.24 11.00 -148.98 -1.64 -13.88 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 2.68 7.97 -2.38 -0.02 2.67 16 28 H 0.07 2.30 7.87 -2.39 -0.02 2.28 16 29 H 0.33 13.21 7.92 -89.69 -0.71 12.50 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.80 5.65 -2.39 -0.01 1.78 16 33 H 0.26 16.11 6.66 -92.71 -0.62 15.50 16 34 H 0.09 2.74 7.43 -2.39 -0.02 2.72 16 35 H 0.06 1.96 7.56 -2.39 -0.02 1.94 16 Total: -1.00 -62.59 278.69 1.57 -61.02 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.50 Total: 21.84 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.18 Total: -32.86 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.52 Total: -88.98 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.64 Total: -13.88 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -62.59 1.57 -61.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688513484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.069 kcal (2) G-P(sol) polarization free energy of solvation -62.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds