Wall clock time and date at job start Mon Mar 30 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 C 1.52995 * 109.47123 * 120.00085 * 2 1 3 5 5 H 1.09004 * 110.33411 * 57.74840 * 4 2 1 6 6 C 1.54479 * 110.37122 * 179.97438 * 4 2 1 7 7 C 1.54513 * 104.06191 * 142.80944 * 6 4 2 8 8 H 1.08994 * 110.50919 * 241.21636 * 7 6 4 9 9 N 1.46898 * 110.50839 * 118.64357 * 7 6 4 10 10 C 1.46906 * 110.99888 * 154.99952 * 9 7 6 11 11 C 1.50699 * 109.47140 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00302 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99832 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47310 * 89.99428 * 15 13 11 17 17 H 1.48491 * 109.47296 * 209.99911 * 15 13 11 18 18 H 1.48502 * 109.46905 * 329.99956 * 15 13 11 19 19 C 1.54477 * 104.06200 * 0.02562 * 7 6 4 20 20 O 1.44419 * 110.37359 * 295.38071 * 4 2 1 21 21 H 1.09004 * 109.47466 * 59.99434 * 1 2 3 22 22 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47028 * 299.99767 * 1 2 3 24 24 H 1.09005 * 109.47028 * 240.00233 * 2 1 3 25 25 H 1.08993 * 109.46678 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47103 * 300.00300 * 3 2 1 27 27 H 1.08999 * 109.46871 * 59.99772 * 3 2 1 28 28 H 1.08998 * 110.50969 * 24.16632 * 6 4 2 29 29 H 1.09002 * 110.50930 * 261.45204 * 6 4 2 30 30 H 1.00902 * 111.00533 * 31.04358 * 9 7 6 31 31 H 1.09000 * 109.47033 * 300.00113 * 10 9 7 32 32 H 1.09001 * 109.46544 * 60.00058 * 10 9 7 33 33 H 0.97002 * 119.99998 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.37504 * 94.85114 * 19 7 6 35 35 H 1.09004 * 110.37100 * 217.19286 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6520 -1.7393 1.2837 6 6 3.5846 -0.7339 1.2699 7 6 3.9416 -0.5491 2.7618 8 1 4.5168 0.3653 2.9064 9 7 4.6903 -1.7109 3.2595 10 6 5.5259 -1.3447 4.4110 11 6 6.2776 -2.5588 4.8925 12 1 6.1472 -3.5077 4.3934 13 6 7.1316 -2.4583 5.9702 14 7 7.7872 -3.5180 6.3908 15 14 7.3565 -0.8173 6.8339 16 1 6.3603 -0.6932 7.9283 17 1 8.7268 -0.7399 7.4007 18 1 7.1609 0.2859 5.8593 19 6 2.5704 -0.4473 3.4660 20 8 1.6605 0.0043 2.4388 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.9812 0.0904 0.6773 29 1 3.9636 -1.6873 0.9017 30 1 5.2465 -2.1241 2.5260 31 1 6.2356 -0.5726 4.1139 32 1 4.8927 -0.9668 5.2137 33 1 8.3884 -3.4472 7.1488 34 1 2.2638 -1.4231 3.8426 35 1 2.6143 0.2774 4.2790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691243345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:25 Heat of formation + Delta-G solvation = -58.201293 kcal Electronic energy + Delta-G solvation = -14573.373711 eV Core-core repulsion = 12184.818326 eV Total energy + Delta-G solvation = -2388.555385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61476 -35.60952 -34.51692 -32.52408 -30.32625 -27.95213 -27.17495 -26.08412 -23.28977 -21.30306 -20.39922 -19.79533 -16.86508 -16.10737 -15.57441 -15.26866 -14.82662 -14.18364 -14.07153 -13.54172 -13.34547 -13.08255 -12.49855 -12.23314 -12.01218 -11.82207 -11.67467 -11.37792 -10.99151 -10.77674 -10.72546 -10.68767 -10.33820 -10.21992 -9.83681 -9.48560 -9.30668 -8.62464 -7.58448 -6.09220 -4.07751 3.26614 3.33905 3.35827 4.10361 4.38957 4.64992 4.77521 4.91974 5.01859 5.11620 5.20810 5.23980 5.43394 5.58323 5.62276 5.71818 5.74408 5.86677 5.89219 6.00045 6.05109 6.08576 6.19122 6.28200 6.33147 6.39506 6.69865 6.94644 7.08623 7.56103 7.84152 8.24607 8.59997 8.98256 9.52428 11.03982 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064360 B = 0.006034 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.948130 B = 4639.416179 C = 4749.871449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.146 4.146 4 C 0.084 3.916 5 H 0.068 0.932 6 C -0.156 4.156 7 C 0.051 3.949 8 H 0.049 0.951 9 N -0.671 5.671 10 C 0.163 3.837 11 C -0.518 4.518 12 H 0.079 0.921 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.877 3.123 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.055 3.945 20 O -0.374 6.374 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.339 0.661 31 H -0.015 1.015 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.043 8.458 -11.777 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.203 4.203 4 C 0.026 3.974 5 H 0.086 0.914 6 C -0.194 4.194 7 C -0.060 4.060 8 H 0.067 0.933 9 N -0.303 5.303 10 C 0.035 3.965 11 C -0.556 4.556 12 H 0.097 0.903 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.022 4.022 20 O -0.293 6.293 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.003 0.997 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.601 8.329 -11.223 18.164 hybrid contribution 1.186 1.106 0.232 1.638 sum -10.415 9.434 -10.992 17.841 Atomic orbital electron populations 1.21775 0.94857 1.01651 1.01850 1.21171 0.96351 0.96942 0.96376 1.21823 1.00971 0.95709 1.01799 1.22903 0.93263 0.95126 0.86145 0.91428 1.23271 0.96352 1.02926 0.96864 1.22862 0.96015 0.94302 0.92794 0.93305 1.60577 1.32580 1.26299 1.10871 1.20069 0.90841 0.96462 0.89116 1.21045 1.23622 0.95987 1.14959 0.90271 1.24902 0.95283 0.96375 0.96693 1.69897 1.28538 1.28861 1.26518 0.86829 0.77645 0.84801 0.80279 1.20064 1.21148 1.19307 1.23490 0.87741 1.00390 0.90618 1.89054 1.55860 1.64729 1.19669 0.93038 0.92888 0.91931 0.90457 0.92565 0.93192 0.91767 0.90530 0.90079 0.84272 0.99712 0.95991 0.92594 0.90907 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.10 37.16 0.34 -1.11 16 2 C -0.09 -0.97 2.84 -90.62 -0.26 -1.23 16 3 C -0.15 -1.55 8.77 37.16 0.33 -1.22 16 4 C 0.08 1.10 3.00 -25.96 -0.08 1.02 16 5 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.16 -2.14 6.13 -25.16 -0.15 -2.29 16 7 C 0.05 0.87 3.46 -66.15 -0.23 0.64 16 8 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 9 N -0.67 -13.66 6.29 -106.33 -0.67 -14.33 16 10 C 0.16 3.94 4.37 -4.97 -0.02 3.92 16 11 C -0.52 -14.78 9.87 -34.44 -0.34 -15.12 16 12 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 15 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.37 6.54 56.52 0.37 -6.01 16 19 C 0.05 0.90 7.35 37.93 0.28 1.18 16 20 O -0.37 -5.75 10.12 -35.23 -0.36 -6.10 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.60 6.11 -51.93 -0.32 0.28 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.76 7.61 -51.93 -0.40 0.37 16 28 H 0.08 0.96 5.79 -51.93 -0.30 0.65 16 29 H 0.08 1.08 7.55 -51.93 -0.39 0.68 16 30 H 0.34 6.63 8.06 -39.29 -0.32 6.31 16 31 H -0.01 -0.36 7.13 -51.93 -0.37 -0.73 16 32 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -30.06 277.73 -6.82 -36.88 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.84 Total: 1.60 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.23 Total: -12.29 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.10 Total: -41.17 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.36 Total: -6.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.06 -6.82 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691243345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.324 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds