Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47088 * 2 1 4 4 C 1.52995 * 109.47123 * 120.00085 * 2 1 3 5 5 H 1.09004 * 110.33411 * 57.74840 * 4 2 1 6 6 C 1.54479 * 110.37122 * 179.97438 * 4 2 1 7 7 C 1.54513 * 104.06191 * 142.80944 * 6 4 2 8 8 H 1.08994 * 110.50919 * 241.21636 * 7 6 4 9 9 N 1.46898 * 110.50839 * 118.64357 * 7 6 4 10 10 C 1.46906 * 110.99888 * 154.99952 * 9 7 6 11 11 C 1.50699 * 109.47140 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00302 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99832 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47310 * 89.99428 * 15 13 11 17 17 H 1.48491 * 109.47296 * 209.99911 * 15 13 11 18 18 H 1.48502 * 109.46905 * 329.99956 * 15 13 11 19 19 C 1.54477 * 104.06200 * 0.02562 * 7 6 4 20 20 O 1.44419 * 110.37359 * 295.38071 * 4 2 1 21 21 H 1.09004 * 109.47466 * 59.99434 * 1 2 3 22 22 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47028 * 299.99767 * 1 2 3 24 24 H 1.09005 * 109.47028 * 240.00233 * 2 1 3 25 25 H 1.08993 * 109.46678 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47103 * 300.00300 * 3 2 1 27 27 H 1.08999 * 109.46871 * 59.99772 * 3 2 1 28 28 H 1.08998 * 110.50969 * 24.16632 * 6 4 2 29 29 H 1.09002 * 110.50930 * 261.45204 * 6 4 2 30 30 H 1.00902 * 111.00533 * 31.04358 * 9 7 6 31 31 H 1.09000 * 109.47033 * 300.00113 * 10 9 7 32 32 H 1.09001 * 109.46544 * 60.00058 * 10 9 7 33 33 H 0.97002 * 119.99998 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.37504 * 94.85114 * 19 7 6 35 35 H 1.09004 * 110.37100 * 217.19286 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6520 -1.7393 1.2837 6 6 3.5846 -0.7339 1.2699 7 6 3.9416 -0.5491 2.7618 8 1 4.5168 0.3653 2.9064 9 7 4.6903 -1.7109 3.2595 10 6 5.5259 -1.3447 4.4110 11 6 6.2776 -2.5588 4.8925 12 1 6.1472 -3.5077 4.3934 13 6 7.1316 -2.4583 5.9702 14 7 7.7872 -3.5180 6.3908 15 14 7.3565 -0.8173 6.8339 16 1 6.3603 -0.6932 7.9283 17 1 8.7268 -0.7399 7.4007 18 1 7.1609 0.2859 5.8593 19 6 2.5704 -0.4473 3.4660 20 8 1.6605 0.0043 2.4388 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.9812 0.0904 0.6773 29 1 3.9636 -1.6873 0.9017 30 1 5.2465 -2.1241 2.5260 31 1 6.2356 -0.5726 4.1139 32 1 4.8927 -0.9668 5.2137 33 1 8.3884 -3.4472 7.1488 34 1 2.2638 -1.4231 3.8426 35 1 2.6143 0.2774 4.2790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691243345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -79.243370 kcal Electronic energy + Delta-G solvation = -14574.286164 eV Core-core repulsion = 12184.818326 eV Total energy + Delta-G solvation = -2389.467838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79606 -37.06873 -35.66625 -34.57416 -31.84071 -29.31781 -28.04254 -27.77144 -24.47234 -23.18147 -21.76298 -20.75091 -18.97145 -17.28794 -16.89149 -16.59394 -16.44182 -15.76273 -15.26523 -14.98084 -14.51843 -14.46612 -14.22320 -13.64887 -13.40768 -12.96881 -12.71619 -12.66325 -12.49320 -12.26097 -12.04165 -11.86102 -11.67050 -11.50924 -11.46711 -11.29834 -10.83174 -10.66004 -9.23736 -8.32193 -6.37122 1.34258 1.34997 1.45869 2.32037 2.94073 3.01991 3.45525 3.56830 3.73492 4.06291 4.09606 4.21819 4.29186 4.43406 4.58055 4.72099 4.77298 4.79791 4.89004 4.92032 4.92876 4.98148 5.04828 5.10028 5.16206 5.22857 5.47976 5.49672 5.53196 5.80760 6.00185 6.50014 6.61831 6.73235 7.28124 8.84456 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064360 B = 0.006034 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.948130 B = 4639.416179 C = 4749.871449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.079 3.921 5 H 0.065 0.935 6 C -0.148 4.148 7 C 0.048 3.952 8 H 0.048 0.952 9 N -0.677 5.677 10 C 0.175 3.825 11 C -0.530 4.530 12 H 0.039 0.961 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.950 3.050 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.252 1.252 19 C 0.057 3.943 20 O -0.379 6.379 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.342 0.658 31 H -0.012 1.012 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.058 0.942 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.687 10.389 -12.778 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.022 3.978 5 H 0.083 0.917 6 C -0.186 4.186 7 C -0.062 4.062 8 H 0.066 0.934 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.568 4.568 12 H 0.057 0.943 13 C -0.188 4.188 14 N -0.586 5.586 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.175 1.175 19 C -0.021 4.021 20 O -0.298 6.298 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.161 0.839 31 H 0.006 0.994 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.268 10.263 -12.250 20.147 hybrid contribution 1.343 0.413 0.473 1.482 sum -10.925 10.676 -11.777 19.288 Atomic orbital electron populations 1.21759 0.94337 1.01908 1.01965 1.21219 0.96798 0.96980 0.95600 1.21808 1.00934 0.95494 1.01899 1.23085 0.92933 0.95346 0.86459 0.91703 1.23250 0.96771 1.03923 0.94675 1.22935 0.95539 0.92727 0.95043 0.93384 1.60458 1.31945 1.28148 1.10425 1.19806 0.90815 0.94295 0.90482 1.21323 1.24355 0.96135 1.14975 0.94293 1.25859 0.94803 1.00599 0.97527 1.70047 1.29587 1.31576 1.27440 0.85681 0.77915 0.79840 0.79290 1.19058 1.20523 1.17533 1.23378 0.87677 0.99836 0.91160 1.89063 1.55643 1.64928 1.20148 0.91268 0.92605 0.93471 0.88550 0.92553 0.91400 0.93390 0.88791 0.89600 0.83946 0.99434 0.95863 0.92286 0.92344 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.10 71.98 0.65 -1.88 16 2 C -0.09 -1.66 2.84 -10.79 -0.03 -1.69 16 3 C -0.14 -2.67 8.77 71.98 0.63 -2.04 16 4 C 0.08 1.94 3.00 31.10 0.09 2.04 16 5 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 6 C -0.15 -3.76 6.13 31.61 0.19 -3.57 16 7 C 0.05 1.56 3.46 45.93 0.16 1.72 16 8 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16 9 N -0.68 -27.23 6.29 -490.33 -3.09 -30.32 16 10 C 0.17 8.32 4.37 85.56 0.37 8.69 16 11 C -0.53 -30.71 9.87 25.60 0.25 -30.46 16 12 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 13 C 0.01 0.58 5.47 84.65 0.46 1.04 16 14 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 15 Si 0.95 44.01 27.47 68.60 1.88 45.89 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 19 C 0.06 1.82 7.35 72.48 0.53 2.35 16 20 O -0.38 -11.12 10.12 -148.98 -1.51 -12.63 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 0.98 7.85 -2.38 -0.02 0.96 16 24 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.06 1.03 6.11 -2.39 -0.01 1.02 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.04 7.61 -2.39 -0.02 1.03 16 28 H 0.09 2.07 5.79 -2.39 -0.01 2.06 16 29 H 0.09 2.11 7.55 -2.39 -0.02 2.09 16 30 H 0.34 13.27 8.06 -89.69 -0.72 12.55 16 31 H -0.01 -0.56 7.13 -2.39 -0.02 -0.58 16 32 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.50 277.73 1.19 -63.31 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.27 Total: 16.38 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.32 Total: -23.79 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -2.79 Total: -89.17 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -1.51 Total: -12.63 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -64.50 1.19 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691243345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.931 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds