Wall clock time and date at job start Mon Mar 30 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 C 1.52996 * 109.47161 * 119.99692 * 2 1 3 5 5 H 1.09007 * 110.55210 * 61.42808 * 4 2 1 6 6 C 1.55346 * 110.58674 * 184.48451 * 4 2 1 7 7 C 1.54818 * 101.93332 * 155.54761 * 6 4 2 8 8 H 1.09000 * 110.48588 * 220.34086 * 7 6 4 9 9 N 1.46494 * 110.49032 * 97.82178 * 7 6 4 10 10 C 1.46505 * 120.00128 * 301.84450 * 9 7 6 11 11 C 1.36931 * 120.00164 * 121.84581 * 9 7 6 12 12 H 1.08002 * 120.00050 * 335.65371 * 11 9 7 13 13 C 1.38810 * 120.00180 * 155.65692 * 11 9 7 14 14 N 1.31624 * 119.99851 * 330.31575 * 13 11 9 15 15 Si 1.86796 * 120.00216 * 150.32503 * 13 11 9 16 16 H 1.48502 * 109.47183 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47104 * 299.99632 * 15 13 11 18 18 H 1.48495 * 109.47542 * 59.99604 * 15 13 11 19 19 C 1.54107 * 104.30313 * 339.08190 * 7 6 4 20 20 O 1.43742 * 107.29392 * 358.03296 * 19 7 6 21 21 H 1.08993 * 109.47486 * 299.99972 * 1 2 3 22 22 H 1.09002 * 109.46892 * 60.00658 * 1 2 3 23 23 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47486 * 240.00028 * 2 1 3 25 25 H 1.09000 * 109.47430 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47324 * 300.00154 * 3 2 1 27 27 H 1.09008 * 109.47320 * 59.99392 * 3 2 1 28 28 H 1.08998 * 110.95848 * 37.41699 * 6 4 2 29 29 H 1.09002 * 111.00744 * 273.69594 * 6 4 2 30 30 H 1.08994 * 109.47511 * 275.20132 * 10 9 7 31 31 H 1.09004 * 109.46680 * 35.19527 * 10 9 7 32 32 H 1.08997 * 109.47380 * 155.19511 * 10 9 7 33 33 H 0.96997 * 119.99759 * 356.16401 * 14 13 11 34 34 H 1.08992 * 109.87933 * 117.45995 * 19 7 6 35 35 H 1.09002 * 109.87578 * 238.61700 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7073 -1.7592 1.2545 6 6 3.5890 -0.6385 1.3336 7 6 3.8365 -0.8102 2.8522 8 1 4.6250 -0.1370 3.1886 9 7 4.1833 -2.1994 3.1614 10 6 3.2584 -3.2806 2.8122 11 6 5.3721 -2.4876 3.7769 12 1 6.2051 -1.8058 3.6888 13 6 5.5066 -3.6560 4.5142 14 7 4.4593 -4.1784 5.1164 15 14 7.1740 -4.4868 4.6519 16 1 7.0510 -5.7079 5.4880 17 1 7.6544 -4.8602 3.2973 18 1 8.1422 -3.5526 5.2804 19 6 2.4912 -0.4326 3.5022 20 8 1.6006 -0.0404 2.4444 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.9470 0.3313 0.9883 29 1 4.0547 -1.4469 0.7698 30 1 2.5183 -3.3956 3.6040 31 1 2.7544 -3.0393 1.8762 32 1 3.8141 -4.2110 2.6963 33 1 3.6059 -3.7180 5.0916 34 1 2.0814 -1.2924 4.0321 35 1 2.6339 0.3980 4.1936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691654743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:33 Heat of formation + Delta-G solvation = -35.055747 kcal Electronic energy + Delta-G solvation = -15246.840661 eV Core-core repulsion = 12859.288942 eV Total energy + Delta-G solvation = -2387.551719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41329 -35.67584 -34.44456 -31.76840 -29.19104 -27.65041 -26.98841 -26.04210 -23.03692 -22.44724 -19.72388 -19.17858 -17.51755 -16.18471 -15.55034 -14.69267 -14.16458 -13.96269 -13.65385 -13.43095 -13.25336 -12.67029 -12.45344 -11.97343 -11.80665 -11.31184 -11.05871 -11.00776 -10.84158 -10.70773 -10.62583 -10.50616 -10.22787 -10.01210 -9.91430 -9.50305 -9.03717 -8.33104 -6.95286 -6.12996 -3.23123 3.48438 3.52229 3.70287 4.34317 4.57712 4.93739 5.05251 5.18306 5.28941 5.34994 5.46402 5.63038 5.73437 5.76258 5.81166 5.92601 5.99390 6.05544 6.07026 6.21297 6.28706 6.37268 6.45399 6.51220 6.61305 6.65179 6.80710 6.88882 7.08511 7.42013 7.98616 8.54105 9.08504 9.82812 10.22294 11.16783 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060296 B = 0.007665 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.265437 B = 3652.005713 C = 3738.066471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.080 3.920 5 H 0.066 0.934 6 C -0.169 4.169 7 C 0.149 3.851 8 H 0.076 0.924 9 N -0.591 5.591 10 C 0.131 3.869 11 C -0.365 4.365 12 H 0.058 0.942 13 C -0.020 4.020 14 N -0.909 5.909 15 Si 1.063 2.937 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.292 1.292 19 C 0.027 3.973 20 O -0.380 6.380 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.008 0.992 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.059 0.941 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 7.357 -8.937 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.202 4.202 4 C 0.022 3.978 5 H 0.084 0.916 6 C -0.209 4.209 7 C 0.039 3.961 8 H 0.094 0.906 9 N -0.314 5.314 10 C -0.014 4.014 11 C -0.493 4.493 12 H 0.076 0.924 13 C -0.223 4.223 14 N -0.548 5.548 15 Si 0.893 3.107 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.219 1.219 19 C -0.052 4.052 20 O -0.300 6.300 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.039 6.145 -8.271 11.067 hybrid contribution -0.630 1.178 -0.490 1.423 sum -4.669 7.323 -8.761 12.337 Atomic orbital electron populations 1.21757 0.95098 1.01523 1.01617 1.21136 0.96132 0.96878 0.96610 1.21839 1.01079 0.95750 1.01512 1.23247 0.93554 0.95332 0.85625 0.91588 1.23783 0.95353 1.02077 0.99683 1.21687 0.94636 0.88053 0.91684 0.90604 1.44012 1.20097 0.98937 1.68342 1.21021 0.93127 0.92042 0.95248 1.19950 0.88660 1.09930 1.30807 0.92380 1.25822 1.04921 0.97755 0.93787 1.70804 1.02835 1.44426 1.36703 0.83549 0.74721 0.76423 0.76016 1.21124 1.22072 1.21942 1.23912 0.91417 0.99458 0.90403 1.88736 1.53671 1.68904 1.18661 0.91977 0.93234 0.93043 0.90676 0.92391 0.93416 0.91933 0.90838 0.90366 0.97350 0.96289 0.92826 0.91935 0.92259 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.07 37.16 0.34 -1.44 16 2 C -0.09 -1.20 2.92 -90.62 -0.26 -1.47 16 3 C -0.14 -1.82 8.70 37.16 0.32 -1.49 16 4 C 0.08 1.33 2.73 -25.49 -0.07 1.26 16 5 H 0.07 1.17 6.15 -51.92 -0.32 0.85 16 6 C -0.17 -3.00 5.58 -24.53 -0.14 -3.14 16 7 C 0.15 3.13 3.57 -66.40 -0.24 2.89 16 8 H 0.08 1.62 7.93 -51.93 -0.41 1.21 16 9 N -0.59 -14.76 2.68 -171.73 -0.46 -15.22 16 10 C 0.13 3.13 7.95 59.85 0.48 3.60 16 11 C -0.36 -10.17 9.40 -15.06 -0.14 -10.31 16 12 H 0.06 1.62 7.97 -52.49 -0.42 1.20 16 13 C -0.02 -0.56 4.59 -17.43 -0.08 -0.64 16 14 N -0.91 -27.29 12.76 55.49 0.71 -26.58 16 15 Si 1.06 25.22 30.01 -169.99 -5.10 20.11 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.03 0.53 7.21 37.74 0.27 0.81 16 20 O -0.38 -7.01 10.03 -35.23 -0.35 -7.37 16 21 H 0.06 0.84 7.78 -51.93 -0.40 0.43 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.72 6.03 -51.93 -0.31 0.41 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.85 7.70 -51.92 -0.40 0.45 16 28 H 0.07 1.17 5.70 -51.93 -0.30 0.88 16 29 H 0.08 1.46 7.96 -51.93 -0.41 1.04 16 30 H 0.01 0.21 6.49 -51.93 -0.34 -0.13 16 31 H 0.02 0.40 5.08 -51.93 -0.26 0.13 16 32 H 0.05 1.39 7.18 -51.93 -0.37 1.01 16 33 H 0.27 8.17 6.38 -40.82 -0.26 7.91 16 34 H 0.06 1.30 6.96 -51.93 -0.36 0.94 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -29.66 268.53 -6.16 -35.82 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.48 Total: -0.89 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.48 Total: -9.92 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.25 Total: -41.80 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.35 Total: -7.37 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.66 -6.16 -35.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691654743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.763 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds