Wall clock time and date at job start Mon Mar 30 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47065 * 2 1 4 4 C 1.52996 * 109.47161 * 119.99692 * 2 1 3 5 5 H 1.09007 * 110.55210 * 61.42808 * 4 2 1 6 6 C 1.55346 * 110.58674 * 184.48451 * 4 2 1 7 7 C 1.54818 * 101.93332 * 155.54761 * 6 4 2 8 8 H 1.09000 * 110.48588 * 220.34086 * 7 6 4 9 9 N 1.46494 * 110.49032 * 97.82178 * 7 6 4 10 10 C 1.46505 * 120.00128 * 301.84450 * 9 7 6 11 11 C 1.36931 * 120.00164 * 121.84581 * 9 7 6 12 12 H 1.08002 * 120.00050 * 335.65371 * 11 9 7 13 13 C 1.38810 * 120.00180 * 155.65692 * 11 9 7 14 14 N 1.31624 * 119.99851 * 330.31575 * 13 11 9 15 15 Si 1.86796 * 120.00216 * 150.32503 * 13 11 9 16 16 H 1.48502 * 109.47183 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47104 * 299.99632 * 15 13 11 18 18 H 1.48495 * 109.47542 * 59.99604 * 15 13 11 19 19 C 1.54107 * 104.30313 * 339.08190 * 7 6 4 20 20 O 1.43742 * 107.29392 * 358.03296 * 19 7 6 21 21 H 1.08993 * 109.47486 * 299.99972 * 1 2 3 22 22 H 1.09002 * 109.46892 * 60.00658 * 1 2 3 23 23 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47486 * 240.00028 * 2 1 3 25 25 H 1.09000 * 109.47430 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.47324 * 300.00154 * 3 2 1 27 27 H 1.09008 * 109.47320 * 59.99392 * 3 2 1 28 28 H 1.08998 * 110.95848 * 37.41699 * 6 4 2 29 29 H 1.09002 * 111.00744 * 273.69594 * 6 4 2 30 30 H 1.08994 * 109.47511 * 275.20132 * 10 9 7 31 31 H 1.09004 * 109.46680 * 35.19527 * 10 9 7 32 32 H 1.08997 * 109.47380 * 155.19511 * 10 9 7 33 33 H 0.96997 * 119.99759 * 356.16401 * 14 13 11 34 34 H 1.08992 * 109.87933 * 117.45995 * 19 7 6 35 35 H 1.09002 * 109.87578 * 238.61700 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7073 -1.7592 1.2545 6 6 3.5890 -0.6385 1.3336 7 6 3.8365 -0.8102 2.8522 8 1 4.6250 -0.1370 3.1886 9 7 4.1833 -2.1994 3.1614 10 6 3.2584 -3.2806 2.8122 11 6 5.3721 -2.4876 3.7769 12 1 6.2051 -1.8058 3.6888 13 6 5.5066 -3.6560 4.5142 14 7 4.4593 -4.1784 5.1164 15 14 7.1740 -4.4868 4.6519 16 1 7.0510 -5.7079 5.4880 17 1 7.6544 -4.8602 3.2973 18 1 8.1422 -3.5526 5.2804 19 6 2.4912 -0.4326 3.5022 20 8 1.6006 -0.0404 2.4444 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.9470 0.3313 0.9883 29 1 4.0547 -1.4469 0.7698 30 1 2.5183 -3.3956 3.6040 31 1 2.7544 -3.0393 1.8762 32 1 3.8141 -4.2110 2.6963 33 1 3.6059 -3.7180 5.0916 34 1 2.0814 -1.2924 4.0321 35 1 2.6339 0.3980 4.1936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691654743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:33 Heat of formation + Delta-G solvation = -52.951254 kcal Electronic energy + Delta-G solvation = -15247.616669 eV Core-core repulsion = 12859.288942 eV Total energy + Delta-G solvation = -2388.327726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92508 -37.45726 -35.75428 -33.67927 -30.91347 -29.20618 -28.10071 -27.94578 -24.75582 -24.04576 -21.31070 -20.56515 -19.53680 -17.76897 -17.03034 -16.36542 -15.69403 -15.44439 -15.38923 -15.18670 -14.60163 -14.38027 -13.72634 -13.47800 -12.98869 -12.90091 -12.76186 -12.53937 -12.46590 -12.42366 -12.16594 -11.90337 -11.69568 -11.65208 -11.48252 -11.28651 -10.56630 -10.42191 -9.02160 -8.33258 -5.41853 1.57961 1.65109 1.84469 2.62005 2.91316 3.16395 3.46285 3.73309 3.78810 4.01756 4.11682 4.19738 4.27988 4.35123 4.51696 4.55837 4.71484 4.77983 4.84844 4.87957 4.93916 5.00056 5.04408 5.11627 5.15469 5.18667 5.24454 5.46842 5.52066 5.76250 5.97263 6.33488 6.99675 7.73453 8.13045 8.93979 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060296 B = 0.007665 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.265437 B = 3652.005713 C = 3738.066471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.142 4.142 4 C 0.078 3.922 5 H 0.053 0.947 6 C -0.156 4.156 7 C 0.138 3.862 8 H 0.070 0.930 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.370 4.370 12 H 0.055 0.945 13 C -0.071 4.071 14 N -0.937 5.937 15 Si 1.114 2.886 16 H -0.293 1.293 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.037 3.963 20 O -0.379 6.379 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.071 0.929 30 H -0.010 1.010 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.254 0.746 34 H 0.033 0.967 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 8.424 -10.647 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.199 4.199 4 C 0.021 3.979 5 H 0.071 0.929 6 C -0.195 4.195 7 C 0.030 3.970 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.001 3.999 11 C -0.500 4.500 12 H 0.073 0.927 13 C -0.268 4.268 14 N -0.578 5.578 15 Si 0.939 3.061 16 H -0.219 1.219 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.042 4.042 20 O -0.299 6.299 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.008 0.992 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.724 7.255 -10.009 12.910 hybrid contribution -0.781 0.920 0.004 1.207 sum -4.505 8.175 -10.005 13.683 Atomic orbital electron populations 1.21739 0.94274 1.01673 1.02099 1.21188 0.96844 0.97305 0.95150 1.21818 1.01056 0.94992 1.02049 1.23373 0.92846 0.95252 0.86396 0.92893 1.23670 0.96143 1.03070 0.96659 1.21894 0.94969 0.85915 0.94185 0.91126 1.44188 1.19727 1.00685 1.68337 1.20816 0.92264 0.90938 0.95907 1.20213 0.89670 1.09950 1.30133 0.92688 1.27192 1.07381 0.98695 0.93543 1.70931 1.02891 1.44940 1.39011 0.82867 0.71277 0.75441 0.76557 1.21877 1.20588 1.20011 1.23656 0.90770 0.98934 0.90863 1.88755 1.53377 1.68822 1.18912 0.93413 0.90838 0.93122 0.88907 0.92344 0.91074 0.93259 0.88506 0.91062 0.99163 0.93377 0.95365 0.93549 0.94914 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.07 71.98 0.65 -2.46 16 2 C -0.09 -2.07 2.92 -10.80 -0.03 -2.10 16 3 C -0.14 -3.10 8.70 71.98 0.63 -2.47 16 4 C 0.08 2.47 2.73 31.40 0.09 2.56 16 5 H 0.05 1.81 6.15 -2.38 -0.01 1.80 16 6 C -0.16 -5.24 5.58 32.02 0.18 -5.07 16 7 C 0.14 5.74 3.57 45.99 0.16 5.90 16 8 H 0.07 2.98 7.93 -2.39 -0.02 2.96 16 9 N -0.61 -30.47 2.68 -697.24 -1.87 -32.34 16 10 C 0.15 7.11 7.95 127.77 1.02 8.12 16 11 C -0.37 -20.75 9.40 84.03 0.79 -19.96 16 12 H 0.06 3.06 7.97 -2.91 -0.02 3.04 16 13 C -0.07 -4.04 4.59 84.86 0.39 -3.65 16 14 N -0.94 -57.53 12.76 21.65 0.28 -57.25 16 15 Si 1.11 50.83 30.01 68.60 2.06 52.89 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 C 0.04 1.45 7.21 72.36 0.52 1.97 16 20 O -0.38 -13.54 10.03 -148.98 -1.49 -15.03 16 21 H 0.05 1.19 7.78 -2.39 -0.02 1.17 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.26 6.03 -2.39 -0.01 1.24 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.05 1.21 7.70 -2.38 -0.02 1.19 16 28 H 0.10 2.81 5.70 -2.39 -0.01 2.80 16 29 H 0.07 2.52 7.96 -2.39 -0.02 2.50 16 30 H -0.01 -0.50 6.49 -2.39 -0.02 -0.52 16 31 H 0.05 2.02 5.08 -2.38 -0.01 2.01 16 32 H 0.03 1.48 7.18 -2.39 -0.02 1.46 16 33 H 0.25 15.99 6.38 -92.71 -0.59 15.40 16 34 H 0.03 1.47 6.96 -2.39 -0.02 1.45 16 35 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -63.55 268.53 4.60 -58.96 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.23 Total: 9.93 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.39 Total: -17.16 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.59 Total: -89.59 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.49 Total: -15.03 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.89 kcal Total: -63.55 4.60 -58.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691654743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.004 kcal (2) G-P(sol) polarization free energy of solvation -63.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds