Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47040 * 2 1 4 4 C 1.52990 * 109.47550 * 239.99495 * 2 1 3 5 5 H 1.09003 * 110.33298 * 307.25090 * 4 2 1 6 6 C 1.54474 * 110.37675 * 185.00006 * 4 2 1 7 7 C 1.54518 * 104.06517 * 217.19197 * 6 4 2 8 8 H 1.08997 * 110.51210 * 118.64195 * 7 6 4 9 9 N 1.46497 * 110.50959 * 241.35822 * 7 6 4 10 10 C 1.46500 * 120.00605 * 59.99534 * 9 7 6 11 11 C 1.36949 * 119.99613 * 239.99794 * 9 7 6 12 12 H 1.08001 * 119.99943 * 23.05091 * 11 9 7 13 13 C 1.38807 * 119.99931 * 203.05448 * 11 9 7 14 14 N 1.31619 * 119.99940 * 11.61255 * 13 11 9 15 15 Si 1.86802 * 120.00189 * 191.61036 * 13 11 9 16 16 H 1.48499 * 109.46724 * 60.00006 * 15 13 11 17 17 H 1.48492 * 109.47294 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46770 * 300.00421 * 15 13 11 19 19 C 1.54477 * 104.05890 * 359.97438 * 7 6 4 20 20 O 1.44422 * 104.80694 * 23.97879 * 19 7 6 21 21 H 1.08992 * 109.47150 * 60.00235 * 1 2 3 22 22 H 1.08997 * 109.47086 * 300.00448 * 1 2 3 23 23 H 1.09002 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47192 * 119.99026 * 2 1 3 25 25 H 1.09003 * 109.46333 * 299.99552 * 3 2 1 26 26 H 1.08997 * 109.47548 * 59.99834 * 3 2 1 27 27 H 1.08996 * 109.47043 * 180.02562 * 3 2 1 28 28 H 1.08997 * 110.50838 * 335.83049 * 6 4 2 29 29 H 1.08994 * 110.51166 * 98.41080 * 6 4 2 30 30 H 1.08998 * 109.46883 * 93.91333 * 10 9 7 31 31 H 1.09006 * 109.47177 * 213.91503 * 10 9 7 32 32 H 1.09000 * 109.47023 * 333.91552 * 10 9 7 33 33 H 0.97000 * 120.00380 * 179.97438 * 14 13 11 34 34 H 1.08997 * 110.37275 * 142.81479 * 19 7 6 35 35 H 1.09008 * 110.37472 * 265.14646 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.5830 -1.7076 -1.3301 6 6 3.5794 -0.8437 -1.2086 7 6 4.0108 -0.6440 -2.6788 8 1 4.6524 0.2321 -2.7730 9 7 4.6944 -1.8389 -3.1800 10 6 3.9957 -3.1263 -3.2051 11 6 5.9866 -1.7523 -3.6249 12 1 6.6225 -0.9487 -3.2840 13 6 6.4792 -2.6975 -4.5142 14 7 5.6555 -3.5363 -5.1061 15 14 8.3110 -2.7789 -4.8711 16 1 9.0488 -3.0524 -3.6118 17 1 8.5773 -3.8656 -5.8474 18 1 8.7628 -1.4829 -5.4381 19 6 2.6809 -0.4253 -3.4337 20 8 1.7628 0.0612 -2.4306 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5137 0.8901 25 1 1.6766 1.9562 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4425 -0.0005 28 1 4.0078 -0.0662 -0.5760 29 1 3.8748 -1.8305 -0.8524 30 1 3.5402 -3.2734 -4.1843 31 1 4.7067 -3.9294 -3.0107 32 1 3.2204 -3.1339 -2.4389 33 1 5.9996 -4.1966 -5.7279 34 1 2.8095 0.3164 -4.2220 35 1 2.3225 -1.3661 -3.8516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691654746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -34.725256 kcal Electronic energy + Delta-G solvation = -15115.784996 eV Core-core repulsion = 12728.247608 eV Total energy + Delta-G solvation = -2387.537388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.28372 -35.50203 -34.32952 -31.68891 -29.28865 -27.36251 -26.96506 -25.99146 -23.13856 -22.46697 -19.59731 -19.23022 -16.91581 -15.85467 -15.47256 -14.80569 -14.40445 -14.00075 -13.56054 -13.22965 -12.94600 -12.39161 -12.28992 -11.94771 -11.79315 -11.32953 -10.97234 -10.95192 -10.80932 -10.66168 -10.49471 -10.43627 -10.20058 -10.04688 -9.81100 -9.77601 -9.13729 -8.53307 -6.76042 -5.74219 -3.21101 3.38181 3.43383 3.44386 4.38767 4.53824 4.97493 5.10953 5.26275 5.37963 5.45341 5.58687 5.70656 5.78865 5.80685 5.92186 5.99237 6.07515 6.09449 6.13421 6.31310 6.35755 6.43801 6.54138 6.64191 6.67146 6.82732 6.88969 7.36356 7.42872 7.71940 7.79227 8.38861 9.22080 9.84890 10.34223 11.30818 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.007368 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.489989 B = 3799.078920 C = 3938.140796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.081 3.919 5 H 0.059 0.941 6 C -0.170 4.170 7 C 0.151 3.849 8 H 0.073 0.927 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.259 4.259 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.908 5.908 15 Si 0.907 3.093 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.027 3.973 20 O -0.380 6.380 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.044 0.956 32 H -0.002 1.002 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 5.467 8.366 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.199 4.199 4 C 0.023 3.977 5 H 0.077 0.923 6 C -0.209 4.209 7 C 0.042 3.958 8 H 0.091 0.909 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.388 4.388 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.553 5.553 15 Si 0.737 3.263 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.209 1.209 19 C -0.052 4.052 20 O -0.298 6.298 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.212 5.474 8.202 12.217 hybrid contribution 1.137 -0.379 -0.350 1.249 sum -6.074 5.094 7.852 11.158 Atomic orbital electron populations 1.21794 0.95265 1.01423 1.01635 1.21160 0.95884 0.97069 0.96646 1.21756 1.01130 0.95599 1.01432 1.22897 0.95030 0.93691 0.86057 0.92315 1.23551 0.94684 1.02474 1.00241 1.21650 0.92489 0.91313 0.90365 0.90877 1.43949 1.11848 1.02283 1.73178 1.20751 0.93898 0.87059 0.96463 1.19203 0.86993 1.12033 1.20594 0.91403 1.25046 0.98060 0.99596 0.96841 1.70055 1.32804 1.22180 1.30276 0.86301 0.85062 0.77288 0.77674 1.21058 1.21599 1.20898 1.24103 0.90233 0.99228 0.91632 1.88989 1.59322 1.59705 1.21825 0.92091 0.93196 0.93066 0.90724 0.91788 0.93552 0.92516 0.91413 0.90555 0.95283 0.93709 0.98393 0.93635 0.90065 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.13 37.16 0.34 -1.39 16 2 C -0.09 -1.19 2.78 -90.62 -0.25 -1.44 16 3 C -0.14 -1.82 8.77 37.16 0.33 -1.49 16 4 C 0.08 1.32 2.95 -25.96 -0.08 1.25 16 5 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.17 -3.03 5.62 -25.16 -0.14 -3.17 16 7 C 0.15 3.18 3.60 -66.36 -0.24 2.95 16 8 H 0.07 1.55 7.94 -51.93 -0.41 1.14 16 9 N -0.59 -14.84 2.86 -171.69 -0.49 -15.33 16 10 C 0.16 4.02 7.40 59.85 0.44 4.46 16 11 C -0.26 -7.12 9.61 -15.06 -0.14 -7.27 16 12 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 13 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 14 N -0.91 -26.49 10.64 55.49 0.59 -25.90 16 15 Si 0.91 21.84 29.57 -169.99 -5.03 16.81 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.03 0.53 7.23 37.93 0.27 0.80 16 20 O -0.38 -6.90 10.13 -35.23 -0.36 -7.25 16 21 H 0.06 0.79 8.01 -51.93 -0.42 0.37 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.89 7.51 -51.93 -0.39 0.50 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.74 6.38 -51.93 -0.33 0.41 16 28 H 0.07 1.11 6.11 -51.93 -0.32 0.79 16 29 H 0.08 1.44 7.19 -51.93 -0.37 1.07 16 30 H 0.03 0.77 7.31 -51.93 -0.38 0.39 16 31 H 0.04 1.19 7.22 -51.93 -0.38 0.81 16 32 H 0.00 -0.05 7.03 -51.93 -0.36 -0.42 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.06 1.28 6.88 -51.92 -0.36 0.92 16 LS Contribution 273.34 15.07 4.12 4.12 Total: -1.00 -28.89 273.34 -6.53 -35.41 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.80 Total: -2.54 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.44 Total: -5.31 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.10 Total: -41.24 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.36 Total: -7.25 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.89 -6.53 -35.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691654746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.689 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds