Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47040 * 2 1 4 4 C 1.52990 * 109.47550 * 239.99495 * 2 1 3 5 5 H 1.09003 * 110.33298 * 307.25090 * 4 2 1 6 6 C 1.54474 * 110.37675 * 185.00006 * 4 2 1 7 7 C 1.54518 * 104.06517 * 217.19197 * 6 4 2 8 8 H 1.08997 * 110.51210 * 118.64195 * 7 6 4 9 9 N 1.46497 * 110.50959 * 241.35822 * 7 6 4 10 10 C 1.46500 * 120.00605 * 59.99534 * 9 7 6 11 11 C 1.36949 * 119.99613 * 239.99794 * 9 7 6 12 12 H 1.08001 * 119.99943 * 23.05091 * 11 9 7 13 13 C 1.38807 * 119.99931 * 203.05448 * 11 9 7 14 14 N 1.31619 * 119.99940 * 11.61255 * 13 11 9 15 15 Si 1.86802 * 120.00189 * 191.61036 * 13 11 9 16 16 H 1.48499 * 109.46724 * 60.00006 * 15 13 11 17 17 H 1.48492 * 109.47294 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46770 * 300.00421 * 15 13 11 19 19 C 1.54477 * 104.05890 * 359.97438 * 7 6 4 20 20 O 1.44422 * 104.80694 * 23.97879 * 19 7 6 21 21 H 1.08992 * 109.47150 * 60.00235 * 1 2 3 22 22 H 1.08997 * 109.47086 * 300.00448 * 1 2 3 23 23 H 1.09002 * 109.46919 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47192 * 119.99026 * 2 1 3 25 25 H 1.09003 * 109.46333 * 299.99552 * 3 2 1 26 26 H 1.08997 * 109.47548 * 59.99834 * 3 2 1 27 27 H 1.08996 * 109.47043 * 180.02562 * 3 2 1 28 28 H 1.08997 * 110.50838 * 335.83049 * 6 4 2 29 29 H 1.08994 * 110.51166 * 98.41080 * 6 4 2 30 30 H 1.08998 * 109.46883 * 93.91333 * 10 9 7 31 31 H 1.09006 * 109.47177 * 213.91503 * 10 9 7 32 32 H 1.09000 * 109.47023 * 333.91552 * 10 9 7 33 33 H 0.97000 * 120.00380 * 179.97438 * 14 13 11 34 34 H 1.08997 * 110.37275 * 142.81479 * 19 7 6 35 35 H 1.09008 * 110.37472 * 265.14646 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.5830 -1.7076 -1.3301 6 6 3.5794 -0.8437 -1.2086 7 6 4.0108 -0.6440 -2.6788 8 1 4.6524 0.2321 -2.7730 9 7 4.6944 -1.8389 -3.1800 10 6 3.9957 -3.1263 -3.2051 11 6 5.9866 -1.7523 -3.6249 12 1 6.6225 -0.9487 -3.2840 13 6 6.4792 -2.6975 -4.5142 14 7 5.6555 -3.5363 -5.1061 15 14 8.3110 -2.7789 -4.8711 16 1 9.0488 -3.0524 -3.6118 17 1 8.5773 -3.8656 -5.8474 18 1 8.7628 -1.4829 -5.4381 19 6 2.6809 -0.4253 -3.4337 20 8 1.7628 0.0612 -2.4306 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5137 0.8901 25 1 1.6766 1.9562 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4425 -0.0005 28 1 4.0078 -0.0662 -0.5760 29 1 3.8748 -1.8305 -0.8524 30 1 3.5402 -3.2734 -4.1843 31 1 4.7067 -3.9294 -3.0107 32 1 3.2204 -3.1339 -2.4389 33 1 5.9996 -4.1966 -5.7279 34 1 2.8095 0.3164 -4.2220 35 1 2.3225 -1.3661 -3.8516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691654746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -51.760599 kcal Electronic energy + Delta-G solvation = -15116.523703 eV Core-core repulsion = 12728.247608 eV Total energy + Delta-G solvation = -2388.276096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76668 -37.24500 -35.64589 -33.61450 -30.97625 -28.89584 -28.07859 -27.92270 -24.94771 -23.94057 -21.08072 -20.66619 -18.90785 -17.56861 -16.88788 -16.35959 -16.14495 -15.32533 -15.21947 -14.62785 -14.48209 -14.23195 -13.74975 -13.37402 -12.94519 -12.86244 -12.65065 -12.63161 -12.45140 -12.27800 -12.14880 -11.95727 -11.86881 -11.59978 -11.45146 -11.24903 -10.71238 -10.52841 -8.79993 -7.85281 -5.34835 1.46763 1.48911 1.55723 2.48512 3.00999 3.27835 3.69715 3.79608 3.87639 4.13475 4.22243 4.25512 4.38060 4.44647 4.62511 4.75425 4.84960 4.86583 4.93106 4.99182 5.02291 5.12150 5.20632 5.24195 5.24701 5.36168 5.51468 5.56077 5.59475 5.66929 5.96565 6.31777 7.12292 7.83061 8.27774 9.18150 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.007368 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.489989 B = 3799.078920 C = 3938.140796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.140 4.140 4 C 0.080 3.920 5 H 0.055 0.945 6 C -0.159 4.159 7 C 0.142 3.858 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.182 3.818 11 C -0.270 4.270 12 H 0.072 0.928 13 C -0.051 4.051 14 N -0.939 5.939 15 Si 0.972 3.028 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.275 1.275 19 C 0.036 3.964 20 O -0.378 6.378 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.003 0.997 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 6.458 9.908 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.022 3.978 5 H 0.073 0.927 6 C -0.198 4.198 7 C 0.034 3.966 8 H 0.088 0.912 9 N -0.328 5.328 10 C 0.037 3.963 11 C -0.400 4.400 12 H 0.090 0.910 13 C -0.246 4.246 14 N -0.586 5.586 15 Si 0.800 3.200 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.201 1.201 19 C -0.043 4.043 20 O -0.297 6.297 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.349 6.497 9.772 13.846 hybrid contribution 1.123 -0.640 -0.783 1.511 sum -6.226 5.858 8.989 12.405 Atomic orbital electron populations 1.21771 0.94150 1.01851 1.02082 1.21209 0.96828 0.97142 0.95336 1.21740 1.00813 0.95270 1.01896 1.23056 0.93930 0.94038 0.86733 0.92669 1.23417 0.95885 1.02561 0.97939 1.21846 0.92677 0.89708 0.92344 0.91226 1.44130 1.11706 1.03529 1.73434 1.20436 0.93539 0.86500 0.95844 1.19563 0.88272 1.11935 1.20221 0.91029 1.25831 1.02178 0.99574 0.97045 1.70225 1.34451 1.22864 1.31040 0.85269 0.80105 0.77214 0.77404 1.20371 1.22020 1.20050 1.23842 0.89797 0.98597 0.92017 1.89007 1.58752 1.59815 1.22113 0.93415 0.90995 0.92706 0.88970 0.93231 0.91228 0.92954 0.89581 0.91505 0.97916 0.96288 0.95620 0.94162 0.89700 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.13 71.98 0.66 -2.32 16 2 C -0.09 -2.05 2.78 -10.80 -0.03 -2.08 16 3 C -0.14 -3.18 8.77 71.98 0.63 -2.55 16 4 C 0.08 2.46 2.95 31.09 0.09 2.55 16 5 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.16 -5.40 5.62 31.61 0.18 -5.22 16 7 C 0.14 5.90 3.60 46.01 0.17 6.06 16 8 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 9 N -0.60 -30.54 2.86 -697.09 -1.99 -32.53 16 10 C 0.18 9.11 7.40 127.77 0.95 10.06 16 11 C -0.27 -14.89 9.61 84.03 0.81 -14.08 16 12 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 13 C -0.05 -2.87 5.12 84.86 0.43 -2.44 16 14 N -0.94 -55.85 10.64 21.65 0.23 -55.62 16 15 Si 0.97 45.01 29.57 68.60 2.03 47.04 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 C 0.04 1.42 7.23 72.48 0.52 1.95 16 20 O -0.38 -13.23 10.13 -148.98 -1.51 -14.74 16 21 H 0.05 1.13 8.01 -2.39 -0.02 1.11 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.27 7.51 -2.39 -0.02 1.25 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.22 6.38 -2.39 -0.02 1.21 16 28 H 0.09 2.61 6.11 -2.39 -0.01 2.60 16 29 H 0.07 2.42 7.19 -2.39 -0.02 2.41 16 30 H 0.00 0.14 7.31 -2.39 -0.02 0.12 16 31 H 0.02 1.01 7.22 -2.38 -0.02 0.99 16 32 H 0.03 1.11 7.03 -2.39 -0.02 1.09 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.04 1.83 6.88 -2.38 -0.02 1.82 16 Total: -1.00 -61.18 273.34 4.20 -56.98 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.04 Total: 6.95 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.41 Total: -8.07 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.76 Total: -88.15 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.51 Total: -14.74 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -61.18 4.20 -56.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691654746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.215 kcal (2) G-P(sol) polarization free energy of solvation -61.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds