Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 H 1.09001 * 109.46968 * 334.94018 * 3 2 1 5 5 C 1.50698 * 109.47255 * 214.94234 * 3 2 1 6 6 H 1.08002 * 119.99584 * 239.99765 * 5 3 2 7 7 C 1.37872 * 120.00084 * 60.00044 * 5 3 2 8 8 N 1.31515 * 119.99981 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47316 * 89.99699 * 9 7 5 11 11 H 1.48499 * 109.46993 * 209.99784 * 9 7 5 12 12 H 1.48498 * 109.46982 * 329.99538 * 9 7 5 13 13 N 1.46897 * 109.46859 * 94.93801 * 3 2 1 14 14 C 1.46903 * 111.00137 * 259.70558 * 13 3 2 15 15 C 1.52993 * 115.55167 * 290.88669 * 14 13 3 16 16 O 1.42895 * 109.47255 * 27.54617 * 15 14 13 17 17 C 1.42904 * 114.00238 * 179.97438 * 16 15 14 18 18 C 1.53000 * 117.51361 * 76.59128 * 14 13 3 19 19 C 1.52996 * 60.00238 * 107.48132 * 18 14 13 20 20 H 1.08995 * 109.47262 * 314.82041 * 1 2 3 21 21 H 1.09002 * 109.47167 * 74.82815 * 1 2 3 22 22 H 1.09000 * 109.46771 * 194.82583 * 1 2 3 23 23 H 1.08999 * 109.46935 * 240.00206 * 2 1 3 24 24 H 1.08999 * 109.47386 * 120.00031 * 2 1 3 25 25 H 0.97002 * 119.99832 * 180.02562 * 8 7 5 26 26 H 1.00904 * 110.99595 * 135.75722 * 13 3 2 27 27 H 1.09001 * 109.47273 * 267.54039 * 15 14 13 28 28 H 1.09000 * 109.46977 * 147.54395 * 15 14 13 29 29 H 1.08999 * 109.46874 * 300.00169 * 17 16 15 30 30 H 1.08995 * 109.47282 * 59.99991 * 17 16 15 31 31 H 1.08998 * 109.46892 * 180.02562 * 17 16 15 32 32 H 1.09005 * 117.49877 * 214.97001 * 18 14 13 33 33 H 1.08996 * 117.50112 * 359.97438 * 18 14 13 34 34 H 1.09006 * 117.49752 * 252.50963 * 19 18 14 35 35 H 1.09000 * 117.50664 * 107.48805 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.2834 2.0953 -0.4353 5 6 3.3055 1.5279 -0.8138 6 1 4.2229 1.8622 -0.3520 7 6 3.2923 1.1794 -2.1476 8 7 2.1753 0.7719 -2.7097 9 14 4.8611 1.2846 -3.1561 10 1 5.5856 -0.0094 -3.0810 11 1 4.5211 1.5800 -4.5711 12 1 5.7238 2.3669 -2.6180 13 7 2.3156 1.8644 1.3798 14 6 1.2173 2.6839 1.9091 15 6 1.0647 4.0695 1.2787 16 8 1.5660 4.0419 -0.0592 17 6 1.4694 5.2935 -0.7420 18 6 -0.0593 1.9602 2.3423 19 6 0.8843 2.5436 3.3959 20 1 -0.3633 0.7243 0.7289 21 1 -0.3633 0.2690 -0.9919 22 1 -0.3633 -0.9935 0.2630 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.1661 0.5263 -3.6481 26 1 3.1947 2.3563 1.4388 27 1 1.6270 4.7983 1.8625 28 1 0.0112 4.3489 1.2662 29 1 0.4242 5.5980 -0.7964 30 1 2.0398 6.0480 -0.2004 31 1 1.8700 5.1891 -1.7503 32 1 -1.0079 2.4714 2.1780 33 1 -0.0845 0.8759 2.2341 34 1 1.4800 1.8430 3.9812 35 1 0.5566 3.4386 3.9249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697535811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -11.011839 kcal Electronic energy + Delta-G solvation = -15442.689061 eV Core-core repulsion = 13056.179965 eV Total energy + Delta-G solvation = -2386.509097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.50928 -36.23751 -34.39241 -31.40620 -30.24805 -27.46088 -25.83285 -24.90109 -22.57135 -22.10134 -19.65307 -18.63485 -16.56889 -15.80179 -15.29792 -15.16120 -14.61478 -14.08092 -13.50158 -13.18891 -12.54692 -12.33858 -12.12893 -11.70721 -11.52300 -10.97208 -10.91600 -10.82002 -10.73414 -10.53437 -10.04733 -9.80440 -9.64748 -9.42208 -9.14718 -8.82627 -8.52399 -8.18767 -7.11539 -5.82640 -3.85242 3.37996 3.44418 3.47476 4.12035 4.43382 4.56403 5.07640 5.35249 5.42290 5.49314 5.66415 5.74216 5.81003 5.92947 6.01986 6.11759 6.18736 6.26514 6.38933 6.59328 6.64434 6.70410 6.86174 7.27100 7.51589 7.69795 7.71383 7.78242 7.98343 8.29503 8.43193 8.56848 8.91029 9.26539 9.76020 11.23499 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.012124 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.080381 B = 2308.992043 C = 2779.785121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C 0.220 3.780 4 H 0.043 0.957 5 C -0.504 4.504 6 H 0.051 0.949 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.649 5.649 14 C 0.052 3.948 15 C 0.068 3.932 16 O -0.342 6.342 17 C 0.032 3.968 18 C -0.170 4.170 19 C -0.170 4.170 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.020 0.980 23 H 0.077 0.923 24 H 0.027 0.973 25 H 0.256 0.744 26 H 0.334 0.666 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 5.808 7.055 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.138 4.138 3 C 0.114 3.886 4 H 0.061 0.939 5 C -0.543 4.543 6 H 0.069 0.931 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 N -0.279 5.279 14 C -0.041 4.041 15 C -0.011 4.011 16 O -0.260 6.260 17 C -0.065 4.065 18 C -0.207 4.207 19 C -0.208 4.208 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.929 4.980 7.045 9.480 hybrid contribution 0.836 1.193 -1.121 1.838 sum -3.093 6.172 5.924 9.097 Atomic orbital electron populations 1.22163 0.99517 0.98578 1.01127 1.21546 0.92260 0.99938 1.00019 1.19227 0.96392 0.91765 0.81257 0.93909 1.21373 0.95210 1.43230 0.94475 0.93068 1.24823 0.95620 0.95818 0.97637 1.69981 1.25403 1.45410 1.11807 0.86717 0.84227 0.78149 0.79522 1.20982 1.21567 1.20237 1.60775 1.01776 1.39241 1.26135 1.21415 0.96337 0.91506 0.94855 1.22584 0.96867 0.96834 0.84822 1.88437 1.83144 1.29849 1.24521 1.22676 0.98948 0.86833 0.98065 1.23313 0.93127 1.01604 1.02705 1.23073 1.03728 1.02447 0.91536 0.92654 0.93516 0.96045 0.90500 0.95397 0.93438 0.84777 0.94145 0.94280 0.95226 0.95230 0.89698 0.89761 0.86987 0.88356 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.32 37.16 0.35 -3.13 16 2 C -0.10 -2.48 5.49 -26.73 -0.15 -2.63 16 3 C 0.22 5.58 1.22 -68.87 -0.08 5.49 16 4 H 0.04 1.20 5.25 -51.93 -0.27 0.93 16 5 C -0.50 -13.99 8.51 -34.44 -0.29 -14.28 16 6 H 0.05 1.42 7.42 -52.49 -0.39 1.03 16 7 C 0.06 1.74 5.04 -17.82 -0.09 1.65 16 8 N -0.89 -25.68 11.64 55.43 0.65 -25.04 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.65 -14.22 6.26 -94.25 -0.59 -14.81 16 14 C 0.05 0.97 2.13 -131.60 -0.28 0.69 16 15 C 0.07 1.20 6.16 37.15 0.23 1.43 16 16 O -0.34 -7.15 7.36 -35.23 -0.26 -7.41 16 17 C 0.03 0.53 11.01 101.05 1.11 1.64 16 18 C -0.17 -2.84 7.96 -26.73 -0.21 -3.05 16 19 C -0.17 -2.56 10.18 -26.73 -0.27 -2.84 16 20 H 0.05 1.13 3.54 -51.93 -0.18 0.94 16 21 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 2.16 6.03 -51.93 -0.31 1.85 16 24 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 7.43 8.00 -39.29 -0.31 7.12 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 33 H 0.11 2.00 6.03 -51.93 -0.31 1.69 16 34 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -29.38 276.74 -6.29 -35.66 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.54 Total: 5.71 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 0.31 Total: -15.02 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.06 Total: -39.85 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.26 Total: -7.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.38 -6.29 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.653 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds