Wall clock time and date at job start Mon Mar 30 2020 03:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 H 1.09001 * 109.46968 * 334.94018 * 3 2 1 5 5 C 1.50698 * 109.47255 * 214.94234 * 3 2 1 6 6 H 1.08002 * 119.99584 * 239.99765 * 5 3 2 7 7 C 1.37872 * 120.00084 * 60.00044 * 5 3 2 8 8 N 1.31515 * 119.99981 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47316 * 89.99699 * 9 7 5 11 11 H 1.48499 * 109.46993 * 209.99784 * 9 7 5 12 12 H 1.48498 * 109.46982 * 329.99538 * 9 7 5 13 13 N 1.46897 * 109.46859 * 94.93801 * 3 2 1 14 14 C 1.46903 * 111.00137 * 259.70558 * 13 3 2 15 15 C 1.52993 * 115.55167 * 290.88669 * 14 13 3 16 16 O 1.42895 * 109.47255 * 27.54617 * 15 14 13 17 17 C 1.42904 * 114.00238 * 179.97438 * 16 15 14 18 18 C 1.53000 * 117.51361 * 76.59128 * 14 13 3 19 19 C 1.52996 * 60.00238 * 107.48132 * 18 14 13 20 20 H 1.08995 * 109.47262 * 314.82041 * 1 2 3 21 21 H 1.09002 * 109.47167 * 74.82815 * 1 2 3 22 22 H 1.09000 * 109.46771 * 194.82583 * 1 2 3 23 23 H 1.08999 * 109.46935 * 240.00206 * 2 1 3 24 24 H 1.08999 * 109.47386 * 120.00031 * 2 1 3 25 25 H 0.97002 * 119.99832 * 180.02562 * 8 7 5 26 26 H 1.00904 * 110.99595 * 135.75722 * 13 3 2 27 27 H 1.09001 * 109.47273 * 267.54039 * 15 14 13 28 28 H 1.09000 * 109.46977 * 147.54395 * 15 14 13 29 29 H 1.08999 * 109.46874 * 300.00169 * 17 16 15 30 30 H 1.08995 * 109.47282 * 59.99991 * 17 16 15 31 31 H 1.08998 * 109.46892 * 180.02562 * 17 16 15 32 32 H 1.09005 * 117.49877 * 214.97001 * 18 14 13 33 33 H 1.08996 * 117.50112 * 359.97438 * 18 14 13 34 34 H 1.09006 * 117.49752 * 252.50963 * 19 18 14 35 35 H 1.09000 * 117.50664 * 107.48805 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.2834 2.0953 -0.4353 5 6 3.3055 1.5279 -0.8138 6 1 4.2229 1.8622 -0.3520 7 6 3.2923 1.1794 -2.1476 8 7 2.1753 0.7719 -2.7097 9 14 4.8611 1.2846 -3.1561 10 1 5.5856 -0.0094 -3.0810 11 1 4.5211 1.5800 -4.5711 12 1 5.7238 2.3669 -2.6180 13 7 2.3156 1.8644 1.3798 14 6 1.2173 2.6839 1.9091 15 6 1.0647 4.0695 1.2787 16 8 1.5660 4.0419 -0.0592 17 6 1.4694 5.2935 -0.7420 18 6 -0.0593 1.9602 2.3423 19 6 0.8843 2.5436 3.3959 20 1 -0.3633 0.7243 0.7289 21 1 -0.3633 0.2690 -0.9919 22 1 -0.3633 -0.9935 0.2630 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.1661 0.5263 -3.6481 26 1 3.1947 2.3563 1.4388 27 1 1.6270 4.7983 1.8625 28 1 0.0112 4.3489 1.2662 29 1 0.4242 5.5980 -0.7964 30 1 2.0398 6.0480 -0.2004 31 1 1.8700 5.1891 -1.7503 32 1 -1.0079 2.4714 2.1780 33 1 -0.0845 0.8759 2.2341 34 1 1.4800 1.8430 3.9812 35 1 0.5566 3.4386 3.9249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697535811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:52 Heat of formation + Delta-G solvation = -30.754959 kcal Electronic energy + Delta-G solvation = -15443.545187 eV Core-core repulsion = 13056.179965 eV Total energy + Delta-G solvation = -2387.365223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96194 -37.70920 -36.21886 -33.44060 -31.99534 -28.82556 -27.80657 -26.27153 -24.50439 -23.43309 -21.41048 -20.25637 -18.48513 -17.33304 -16.72515 -16.69484 -16.48108 -15.54159 -15.36403 -14.70093 -14.17524 -14.10076 -13.58602 -13.43068 -13.22432 -12.85960 -12.71873 -12.49725 -12.24593 -12.13342 -11.94020 -11.54587 -11.35169 -11.08624 -10.71442 -10.59534 -10.29253 -10.15516 -8.86364 -7.96673 -6.05155 1.41438 1.42719 1.51545 2.48943 2.82022 3.12581 3.31942 3.62542 4.05739 4.15003 4.40088 4.49690 4.53958 4.58000 4.67478 4.80380 4.82016 4.85881 4.87352 4.92433 4.95949 5.12957 5.36138 5.42225 5.55608 5.71088 5.80552 5.90781 6.24450 6.40000 6.48339 6.61257 7.04893 7.23469 7.59922 9.08141 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.012124 C = 0.010070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.080381 B = 2308.992043 C = 2779.785121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C 0.233 3.767 4 H 0.019 0.981 5 C -0.518 4.518 6 H 0.044 0.956 7 C 0.016 3.984 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.650 5.650 14 C 0.016 3.984 15 C 0.069 3.931 16 O -0.387 6.387 17 C 0.029 3.971 18 C -0.174 4.174 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.023 0.977 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.028 0.972 25 H 0.255 0.745 26 H 0.328 0.672 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 6.759 8.433 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C 0.126 3.874 4 H 0.036 0.964 5 C -0.557 4.557 6 H 0.062 0.938 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.279 5.279 14 C -0.077 4.077 15 C -0.009 4.009 16 O -0.306 6.306 17 C -0.067 4.067 18 C -0.211 4.211 19 C -0.174 4.174 20 H 0.094 0.906 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.275 5.940 8.442 11.173 hybrid contribution 0.926 0.918 -1.492 1.982 sum -3.348 6.858 6.950 10.322 Atomic orbital electron populations 1.22053 0.97362 1.00477 1.00468 1.21422 0.94248 0.99579 0.98148 1.18903 0.94525 0.91221 0.82787 0.96380 1.21696 0.95964 1.42836 0.95164 0.93825 1.25502 0.98334 0.95706 0.98730 1.70107 1.27077 1.46163 1.11846 0.85778 0.80911 0.78132 0.78030 1.20690 1.21295 1.19744 1.60654 1.02824 1.40592 1.23859 1.21670 0.96247 0.92117 0.97616 1.22656 0.98006 0.96627 0.83643 1.88357 1.83819 1.32070 1.26314 1.22761 1.00472 0.86119 0.97358 1.23353 0.93510 1.00835 1.03439 1.23138 1.01483 1.03185 0.89572 0.90647 0.95739 0.93932 0.94032 0.95363 0.93643 0.85483 0.92325 0.92646 0.93385 0.92962 0.91225 0.87835 0.88488 0.88320 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.47 9.32 71.98 0.67 -5.80 16 2 C -0.10 -4.83 5.49 30.60 0.17 -4.66 16 3 C 0.23 11.96 1.22 44.17 0.05 12.01 16 4 H 0.02 1.05 5.25 -2.39 -0.01 1.04 16 5 C -0.52 -29.23 8.51 25.60 0.22 -29.01 16 6 H 0.04 2.46 7.42 -2.91 -0.02 2.44 16 7 C 0.02 0.89 5.04 84.65 0.43 1.32 16 8 N -0.91 -53.99 11.64 21.45 0.25 -53.74 16 9 Si 0.94 45.24 29.54 68.60 2.03 47.27 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 13 N -0.65 -28.22 6.26 -452.10 -2.83 -31.05 16 14 C 0.02 0.58 2.13 3.53 0.01 0.58 16 15 C 0.07 2.29 6.16 71.98 0.44 2.73 16 16 O -0.39 -15.97 7.36 -148.98 -1.10 -17.06 16 17 C 0.03 0.95 11.01 113.37 1.25 2.19 16 18 C -0.17 -5.34 7.96 30.59 0.24 -5.10 16 19 C -0.14 -3.62 10.18 30.59 0.31 -3.31 16 20 H 0.08 3.00 3.54 -2.39 -0.01 2.99 16 21 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 2.39 6.03 -2.39 -0.01 2.37 16 24 H 0.03 1.38 7.99 -2.39 -0.02 1.36 16 25 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.33 14.60 8.00 -89.69 -0.72 13.88 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 2.75 8.03 -2.38 -0.02 2.73 16 33 H 0.10 3.28 6.03 -2.39 -0.01 3.26 16 34 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -63.65 276.74 2.49 -61.16 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.35 Total: 22.48 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 3.79 Total: -29.05 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.58 Total: -84.80 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.10 Total: -17.06 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -63.65 2.49 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.404 kcal (2) G-P(sol) polarization free energy of solvation -63.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds