Wall clock time and date at job start Mon Mar 30 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47015 * 2 1 4 4 H 1.08998 * 109.47369 * 55.65839 * 3 2 1 5 5 C 1.50698 * 109.46921 * 175.66643 * 3 2 1 6 6 H 1.07995 * 120.00346 * 119.72297 * 5 3 2 7 7 C 1.37877 * 119.99566 * 299.99321 * 5 3 2 8 8 N 1.31509 * 120.00501 * 359.72977 * 7 5 3 9 9 Si 1.86801 * 119.99846 * 179.72748 * 7 5 3 10 10 H 1.48499 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47154 * 120.00076 * 9 7 5 12 12 H 1.48502 * 109.47149 * 239.99990 * 9 7 5 13 13 N 1.46908 * 109.46703 * 295.66107 * 3 2 1 14 14 C 1.46896 * 110.99811 * 122.13436 * 13 3 2 15 15 C 1.53001 * 115.54728 * 279.33809 * 14 13 3 16 16 O 1.42898 * 109.47142 * 299.85209 * 15 14 13 17 17 C 1.42905 * 113.99947 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.50403 * 133.63444 * 14 13 3 19 19 C 1.52997 * 60.00076 * 252.50591 * 18 14 13 20 20 H 1.09004 * 109.46872 * 301.05869 * 1 2 3 21 21 H 1.08999 * 109.47056 * 61.05217 * 1 2 3 22 22 H 1.08998 * 109.47135 * 181.06135 * 1 2 3 23 23 H 1.08999 * 109.46752 * 239.99791 * 2 1 3 24 24 H 1.08998 * 109.47328 * 119.99529 * 2 1 3 25 25 H 0.97000 * 120.00607 * 179.97438 * 8 7 5 26 26 H 1.00901 * 110.99998 * 358.17501 * 13 3 2 27 27 H 1.08999 * 109.47164 * 59.85382 * 15 14 13 28 28 H 1.09002 * 109.47292 * 179.85570 * 15 14 13 29 29 H 1.09000 * 109.47084 * 60.00715 * 17 16 15 30 30 H 1.09001 * 109.46640 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47330 * 300.00084 * 17 16 15 32 32 H 1.09009 * 117.49675 * 359.97438 * 18 14 13 33 33 H 1.08994 * 117.50579 * 145.01367 * 18 14 13 34 34 H 1.09000 * 117.49807 * 252.50806 * 19 18 14 35 35 H 1.09006 * 117.50200 * 107.48437 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9784 0.8485 5 6 3.5432 1.4439 0.1074 6 1 4.1401 1.8874 -0.6757 7 6 4.1565 0.8738 1.2027 8 7 3.4297 0.3336 2.1564 9 14 6.0200 0.8686 1.3322 10 1 6.6010 1.5329 0.1379 11 1 6.4331 1.6006 2.5565 12 1 6.5073 -0.5323 1.4050 13 7 1.6377 2.1041 -1.2485 14 6 0.8351 3.3033 -0.9738 15 6 -0.6418 3.0520 -0.6632 16 8 -1.2594 2.4044 -1.7773 17 6 -2.6476 2.1222 -1.5892 18 6 1.1893 4.5807 -1.7377 19 6 1.5221 4.4625 -0.2491 20 1 -0.3633 0.5302 0.8804 21 1 -0.3633 0.4974 -0.8993 22 1 -0.3633 -1.0275 0.0190 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.8611 -0.0678 2.9268 26 1 1.1402 1.4662 -1.8516 27 1 -0.7246 2.4163 0.2183 28 1 -1.1401 4.0027 -0.4736 29 1 -3.1878 3.0534 -1.4187 30 1 -3.0423 1.6314 -2.4789 31 1 -2.7717 1.4670 -0.7271 32 1 2.0182 4.5314 -2.4439 33 1 0.3701 5.2423 -2.0193 34 1 0.9218 5.0463 0.4487 35 1 2.5697 4.3352 0.0240 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697535814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:55 Heat of formation + Delta-G solvation = -25.105233 kcal Electronic energy + Delta-G solvation = -15197.485929 eV Core-core repulsion = 12810.365696 eV Total energy + Delta-G solvation = -2387.120232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.62423 -36.49894 -34.68026 -31.81105 -29.54827 -27.88859 -26.26438 -25.13870 -22.74111 -21.84590 -19.75664 -18.77671 -16.24497 -16.14272 -15.73141 -15.48152 -14.60235 -14.27846 -13.49732 -13.35996 -12.96900 -12.63347 -12.19253 -11.66495 -11.44235 -11.27061 -11.09544 -10.88437 -10.84368 -10.60667 -10.12645 -9.85412 -9.74820 -9.67292 -9.44762 -9.17806 -8.88077 -8.27459 -7.14913 -5.91018 -3.93654 3.34770 3.42723 3.48537 3.86209 4.48882 4.58122 5.10507 5.25704 5.37910 5.40010 5.46230 5.56032 5.64882 5.73604 5.78417 6.17221 6.19268 6.22226 6.25666 6.37620 6.48580 6.57944 6.86702 6.92732 7.07730 7.24912 7.38506 7.53747 7.83271 7.99651 8.40447 8.61588 8.78366 9.15077 9.71011 11.14584 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036619 B = 0.009742 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.450577 B = 2873.330249 C = 3389.844720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.220 3.780 4 H 0.020 0.980 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.646 5.646 14 C 0.052 3.948 15 C 0.070 3.930 16 O -0.381 6.381 17 C 0.032 3.968 18 C -0.165 4.165 19 C -0.154 4.154 20 H 0.037 0.963 21 H 0.051 0.949 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.257 0.743 26 H 0.333 0.667 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 4.385 -4.216 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.038 0.962 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.276 5.276 14 C -0.042 4.042 15 C -0.008 4.008 16 O -0.300 6.300 17 C -0.065 4.065 18 C -0.203 4.203 19 C -0.191 4.191 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.116 0.884 25 H 0.067 0.933 26 H 0.152 0.848 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.226 4.579 -4.273 10.339 hybrid contribution -0.136 -0.498 0.797 0.950 sum -8.362 4.080 -3.476 9.933 Atomic orbital electron populations 1.22061 0.99620 0.99415 1.00330 1.22047 0.91463 1.01402 1.02918 1.19188 0.95093 0.88942 0.85467 0.96172 1.21330 0.91260 1.35341 1.04547 0.91977 1.24964 0.98014 0.95824 0.95919 1.69884 1.34581 1.39697 1.09736 0.86517 0.86057 0.77482 0.77791 1.19795 1.21314 1.21288 1.60598 1.40781 1.07766 1.18461 1.21260 0.88641 0.89537 1.04748 1.22698 0.93204 0.95758 0.89161 1.87886 1.22270 1.79599 1.40197 1.22689 0.82868 0.99225 1.01720 1.23018 1.02791 0.99444 0.95084 1.22978 1.02559 0.99367 0.94229 0.94346 0.93003 0.94864 0.94420 0.88379 0.93285 0.84824 0.92461 0.94026 0.94663 0.89979 0.94251 0.88508 0.90025 0.89922 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.62 37.16 0.32 -2.82 16 2 C -0.14 -3.33 5.08 -26.73 -0.14 -3.47 16 3 C 0.22 5.49 1.92 -68.86 -0.13 5.36 16 4 H 0.02 0.56 7.32 -51.93 -0.38 0.18 16 5 C -0.49 -13.48 8.84 -34.44 -0.30 -13.79 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.69 11.31 55.43 0.63 -25.06 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.65 -14.22 6.34 -94.25 -0.60 -14.81 16 14 C 0.05 0.98 1.73 -131.61 -0.23 0.75 16 15 C 0.07 1.19 5.01 37.16 0.19 1.37 16 16 O -0.38 -6.23 8.85 -35.23 -0.31 -6.54 16 17 C 0.03 0.39 11.01 101.05 1.11 1.51 16 18 C -0.17 -2.78 10.17 -26.74 -0.27 -3.05 16 19 C -0.15 -2.78 9.59 -26.73 -0.26 -3.04 16 20 H 0.04 0.77 7.23 -51.93 -0.38 0.39 16 21 H 0.05 0.98 4.64 -51.93 -0.24 0.74 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.10 2.63 5.98 -51.93 -0.31 2.32 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.33 7.20 6.63 -39.29 -0.26 6.94 16 27 H 0.06 1.03 6.17 -51.93 -0.32 0.71 16 28 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.11 2.28 8.14 -51.93 -0.42 1.85 16 LS Contribution 280.09 15.07 4.22 4.22 Total: -1.00 -28.64 280.09 -6.54 -35.19 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.66 Total: 6.14 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 0.20 Total: -15.81 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.03 Total: -39.87 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.31 Total: -6.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.64 -6.54 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697535814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.084 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds