Wall clock time and date at job start Mon Mar 30 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47502 * 2 1 4 4 H 1.09008 * 110.45418 * 52.39464 * 3 2 1 5 5 C 1.54484 * 110.51117 * 289.64344 * 3 2 1 6 6 O 1.44418 * 104.80263 * 217.37201 * 5 3 2 7 7 C 1.44424 * 105.27379 * 40.51158 * 6 5 3 8 8 C 1.54480 * 104.80613 * 319.48554 * 7 6 5 9 9 H 1.09004 * 110.62867 * 265.28060 * 8 7 6 10 10 N 1.46896 * 110.51148 * 142.62275 * 8 7 6 11 11 C 1.46904 * 111.00107 * 90.36122 * 10 8 7 12 12 H 1.09007 * 109.46566 * 324.99944 * 11 10 8 13 13 C 1.52998 * 109.47027 * 84.99918 * 11 10 8 14 14 C 1.50701 * 109.47195 * 205.00268 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 11 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 11 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 H 1.09003 * 109.47325 * 60.00066 * 1 2 3 23 23 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47233 * 300.00237 * 1 2 3 25 25 H 1.08997 * 109.47233 * 239.99763 * 2 1 3 26 26 H 1.08999 * 109.47185 * 120.00430 * 2 1 3 27 27 H 1.09000 * 110.36816 * 336.20552 * 5 3 2 28 28 H 1.09003 * 110.36968 * 98.43053 * 5 3 2 29 29 H 1.09008 * 110.37440 * 200.65770 * 7 6 5 30 30 H 1.08996 * 110.37623 * 78.32166 * 7 6 5 31 31 H 1.00900 * 110.99885 * 326.40690 * 10 8 7 32 32 H 1.08998 * 109.47156 * 60.00002 * 13 11 10 33 33 H 1.09004 * 109.46783 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.46870 * 300.00063 * 13 11 10 35 35 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5795 2.0094 0.8091 5 6 1.7619 2.1149 -1.3627 6 8 2.9177 2.9457 -1.6069 7 6 4.0496 2.1593 -1.1752 8 6 3.5796 1.4723 0.1262 9 1 3.8802 2.0540 0.9977 10 7 4.1158 0.1072 0.2102 11 6 5.4130 0.0926 0.8995 12 1 5.9650 0.9999 0.6541 13 6 5.1865 0.0263 2.4111 14 6 6.2036 -1.1116 0.4566 15 1 5.7841 -1.7976 -0.2644 16 6 7.4597 -1.3408 0.9767 17 7 8.1475 -2.3946 0.5943 18 14 8.1849 -0.1545 2.2242 19 1 7.8104 -0.5872 3.5945 20 1 9.6643 -0.1440 2.0954 21 1 7.6565 1.2106 1.9744 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8899 27 1 1.6639 1.3617 -2.1445 28 1 0.8595 2.7239 -1.3081 29 1 4.9058 2.8039 -0.9761 30 1 4.3025 1.4129 -1.9283 31 1 4.1882 -0.3098 -0.7057 32 1 4.6345 -0.8810 2.6564 33 1 6.1491 0.0159 2.9226 34 1 4.6147 0.8973 2.7314 35 1 9.0313 -2.5557 0.9599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699895169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:16 Heat of formation + Delta-G solvation = -48.616830 kcal Electronic energy + Delta-G solvation = -15047.684311 eV Core-core repulsion = 12659.544539 eV Total energy + Delta-G solvation = -2388.139772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58422 -35.82708 -34.18167 -32.36447 -30.26903 -28.21565 -26.83553 -25.05465 -23.62114 -21.84275 -20.34880 -19.06594 -16.94959 -16.22405 -15.54171 -15.29046 -14.95100 -14.16630 -13.51810 -13.39877 -13.14771 -12.90107 -12.57134 -12.19535 -12.06764 -12.00575 -11.21368 -11.16543 -10.91234 -10.60867 -10.54097 -10.30241 -10.10869 -10.09495 -9.59761 -9.51092 -9.07979 -8.65031 -7.54929 -6.14038 -4.14363 3.23851 3.33382 3.35751 4.16653 4.34680 4.84919 4.96919 5.04024 5.16670 5.24855 5.42199 5.47472 5.54655 5.57899 5.69323 5.92602 6.01639 6.04724 6.08544 6.21492 6.28005 6.35960 6.48444 6.57280 6.65299 6.77303 6.80939 7.00193 7.33382 7.51768 7.87753 8.25602 8.55165 8.90082 9.48040 10.98843 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039526 B = 0.008542 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.230997 B = 3277.252715 C = 3500.810169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C -0.113 4.113 4 H 0.076 0.924 5 C 0.047 3.953 6 O -0.383 6.383 7 C 0.018 3.982 8 C 0.058 3.942 9 H 0.083 0.917 10 N -0.661 5.661 11 C 0.180 3.820 12 H 0.001 0.999 13 C -0.137 4.137 14 C -0.521 4.521 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.269 1.269 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.341 0.659 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.025 0.975 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 7.407 -0.860 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.132 4.132 4 H 0.095 0.905 5 C -0.029 4.029 6 O -0.301 6.301 7 C -0.061 4.061 8 C -0.054 4.054 9 H 0.101 0.899 10 N -0.293 5.293 11 C 0.072 3.928 12 H 0.019 0.981 13 C -0.195 4.195 14 C -0.559 4.559 15 H 0.097 0.903 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.194 1.194 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.706 7.349 -0.369 13.827 hybrid contribution 1.137 0.729 0.164 1.361 sum -10.569 8.079 -0.205 13.305 Atomic orbital electron populations 1.21877 0.97245 1.01182 1.00922 1.21269 0.93299 0.94941 1.03991 1.22566 0.95818 0.97662 0.97200 0.90548 1.23533 0.89449 0.93893 0.96068 1.89058 1.15936 1.39672 1.85422 1.24309 0.89879 0.95588 0.96296 1.22966 0.93942 0.91629 0.96889 0.89868 1.60639 1.29138 1.14720 1.24806 1.19565 0.85613 0.96750 0.90906 0.98136 1.22082 0.99012 1.00002 0.98416 1.21079 1.00099 1.08526 1.26180 0.90346 1.24931 0.96761 0.95031 0.96315 1.69890 1.12560 1.27146 1.43922 0.86804 0.77104 0.82094 0.81823 1.20525 1.22527 1.19416 0.93504 0.93000 0.93245 0.92024 0.89765 0.92452 0.89861 0.89504 0.91994 0.83918 0.92308 0.94500 0.95603 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.79 37.16 0.36 -1.34 16 2 C -0.10 -1.31 4.36 -26.73 -0.12 -1.43 16 3 C -0.11 -1.56 3.11 -89.05 -0.28 -1.84 16 4 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 5 C 0.05 0.63 6.51 37.94 0.25 0.87 16 6 O -0.38 -6.13 11.65 -35.23 -0.41 -6.54 16 7 C 0.02 0.29 7.31 37.93 0.28 0.57 16 8 C 0.06 0.95 3.17 -66.15 -0.21 0.74 16 9 H 0.08 1.43 7.21 -51.93 -0.37 1.06 16 10 N -0.66 -12.62 4.29 -99.31 -0.43 -13.05 16 11 C 0.18 4.12 2.06 -68.86 -0.14 3.97 16 12 H 0.00 0.03 6.92 -51.93 -0.36 -0.33 16 13 C -0.14 -3.00 8.88 37.16 0.33 -2.67 16 14 C -0.52 -14.16 9.18 -34.44 -0.32 -14.48 16 15 H 0.08 2.30 7.86 -52.49 -0.41 1.89 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 18 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16 19 H -0.28 -6.68 6.86 56.52 0.39 -6.29 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.34 6.54 56.52 0.37 -5.98 16 22 H 0.05 0.47 7.63 -51.93 -0.40 0.07 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 26 H 0.08 1.30 7.63 -51.93 -0.40 0.91 16 27 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.06 1.01 7.55 -51.93 -0.39 0.61 16 31 H 0.34 6.58 7.36 -39.29 -0.29 6.30 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.04 0.84 3.25 -51.93 -0.17 0.67 16 34 H 0.02 0.49 7.50 -51.93 -0.39 0.10 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -28.76 270.11 -5.77 -34.53 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.70 Total: 3.19 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 0.06 Total: -13.66 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.41 Total: -6.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.76 -5.77 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699895169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.084 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds