Wall clock time and date at job start Mon Mar 30 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47502 * 2 1 4 4 H 1.09008 * 110.45418 * 52.39464 * 3 2 1 5 5 C 1.54484 * 110.51117 * 289.64344 * 3 2 1 6 6 O 1.44418 * 104.80263 * 217.37201 * 5 3 2 7 7 C 1.44424 * 105.27379 * 40.51158 * 6 5 3 8 8 C 1.54480 * 104.80613 * 319.48554 * 7 6 5 9 9 H 1.09004 * 110.62867 * 265.28060 * 8 7 6 10 10 N 1.46896 * 110.51148 * 142.62275 * 8 7 6 11 11 C 1.46904 * 111.00107 * 90.36122 * 10 8 7 12 12 H 1.09007 * 109.46566 * 324.99944 * 11 10 8 13 13 C 1.52998 * 109.47027 * 84.99918 * 11 10 8 14 14 C 1.50701 * 109.47195 * 205.00268 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 11 10 17 17 N 1.31523 * 119.99908 * 179.72112 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 359.71709 * 16 14 11 19 19 H 1.48500 * 109.47210 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00300 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00390 * 18 16 14 22 22 H 1.09003 * 109.47325 * 60.00066 * 1 2 3 23 23 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47233 * 300.00237 * 1 2 3 25 25 H 1.08997 * 109.47233 * 239.99763 * 2 1 3 26 26 H 1.08999 * 109.47185 * 120.00430 * 2 1 3 27 27 H 1.09000 * 110.36816 * 336.20552 * 5 3 2 28 28 H 1.09003 * 110.36968 * 98.43053 * 5 3 2 29 29 H 1.09008 * 110.37440 * 200.65770 * 7 6 5 30 30 H 1.08996 * 110.37623 * 78.32166 * 7 6 5 31 31 H 1.00900 * 110.99885 * 326.40690 * 10 8 7 32 32 H 1.08998 * 109.47156 * 60.00002 * 13 11 10 33 33 H 1.09004 * 109.46783 * 180.02562 * 13 11 10 34 34 H 1.09005 * 109.46870 * 300.00063 * 13 11 10 35 35 H 0.96995 * 120.00181 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5795 2.0094 0.8091 5 6 1.7619 2.1149 -1.3627 6 8 2.9177 2.9457 -1.6069 7 6 4.0496 2.1593 -1.1752 8 6 3.5796 1.4723 0.1262 9 1 3.8802 2.0540 0.9977 10 7 4.1158 0.1072 0.2102 11 6 5.4130 0.0926 0.8995 12 1 5.9650 0.9999 0.6541 13 6 5.1865 0.0263 2.4111 14 6 6.2036 -1.1116 0.4566 15 1 5.7841 -1.7976 -0.2644 16 6 7.4597 -1.3408 0.9767 17 7 8.1475 -2.3946 0.5943 18 14 8.1849 -0.1545 2.2242 19 1 7.8104 -0.5872 3.5945 20 1 9.6643 -0.1440 2.0954 21 1 7.6565 1.2106 1.9744 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8899 27 1 1.6639 1.3617 -2.1445 28 1 0.8595 2.7239 -1.3081 29 1 4.9058 2.8039 -0.9761 30 1 4.3025 1.4129 -1.9283 31 1 4.1882 -0.3098 -0.7057 32 1 4.6345 -0.8810 2.6564 33 1 6.1491 0.0159 2.9226 34 1 4.6147 0.8973 2.7314 35 1 9.0313 -2.5557 0.9599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699895169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:16 Heat of formation + Delta-G solvation = -68.662225 kcal Electronic energy + Delta-G solvation = -15048.553544 eV Core-core repulsion = 12659.544539 eV Total energy + Delta-G solvation = -2389.009005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82922 -37.45673 -35.42776 -34.26244 -31.89513 -29.33270 -28.27570 -27.08023 -24.70238 -23.09235 -22.07113 -20.36765 -18.87076 -17.70260 -16.97457 -16.64434 -16.35003 -15.69900 -15.04723 -14.84366 -14.60809 -14.27972 -14.13196 -13.84754 -13.42880 -13.15988 -12.80514 -12.68858 -12.35419 -12.20635 -12.08486 -11.67751 -11.43269 -11.39049 -11.24452 -11.03297 -10.80727 -10.75471 -9.12101 -8.32124 -6.36453 1.30087 1.34406 1.44560 2.29607 2.94658 3.04010 3.52924 3.77028 3.82199 3.99209 4.17063 4.35503 4.49331 4.55871 4.60502 4.66204 4.70120 4.76003 4.81939 4.88101 4.97945 5.01450 5.02613 5.17964 5.36849 5.47856 5.51208 5.62706 5.70313 5.77907 6.01639 6.47737 6.63218 6.80270 7.30341 8.84199 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039526 B = 0.008542 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.230997 B = 3277.252715 C = 3500.810169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.105 4.105 4 H 0.090 0.910 5 C 0.047 3.953 6 O -0.394 6.394 7 C 0.021 3.979 8 C 0.054 3.946 9 H 0.081 0.919 10 N -0.657 5.657 11 C 0.185 3.815 12 H -0.003 1.003 13 C -0.134 4.134 14 C -0.521 4.521 15 H 0.042 0.958 16 C 0.015 3.985 17 N -0.946 5.946 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.299 1.299 21 H -0.251 1.251 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.337 0.663 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 9.269 -0.056 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.124 4.124 4 H 0.109 0.891 5 C -0.030 4.030 6 O -0.312 6.312 7 C -0.058 4.058 8 C -0.058 4.058 9 H 0.100 0.900 10 N -0.288 5.288 11 C 0.076 3.924 12 H 0.015 0.985 13 C -0.191 4.191 14 C -0.560 4.560 15 H 0.060 0.940 16 C -0.183 4.183 17 N -0.586 5.586 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.227 1.227 21 H -0.175 1.175 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.242 9.228 0.434 16.146 hybrid contribution 1.527 0.109 -0.176 1.541 sum -11.715 9.337 0.257 14.983 Atomic orbital electron populations 1.21818 0.94990 1.01792 1.02029 1.21184 0.95242 0.94353 1.02359 1.22543 0.93584 0.98096 0.98213 0.89125 1.23706 0.89429 0.94213 0.95603 1.89052 1.16501 1.40193 1.85488 1.24199 0.90245 0.95451 0.95923 1.23061 0.95851 0.89839 0.97008 0.90030 1.60622 1.26969 1.16740 1.24461 1.19402 0.86656 0.94210 0.92172 0.98531 1.21990 0.98986 1.01115 0.97052 1.21377 1.00516 1.09162 1.24919 0.93992 1.25769 0.97344 0.96678 0.98477 1.70034 1.13193 1.29449 1.45908 0.85825 0.76052 0.80665 0.79636 1.19345 1.22722 1.17505 0.92116 0.92748 0.92362 0.93137 0.91977 0.91985 0.87223 0.89586 0.92637 0.84362 0.92924 0.95218 0.92647 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.79 71.98 0.70 -2.17 16 2 C -0.09 -2.35 4.36 30.59 0.13 -2.22 16 3 C -0.11 -2.64 3.11 -9.78 -0.03 -2.67 16 4 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 5 C 0.05 1.10 6.51 72.49 0.47 1.57 16 6 O -0.39 -11.72 11.65 -148.98 -1.74 -13.46 16 7 C 0.02 0.63 7.31 72.49 0.53 1.16 16 8 C 0.05 1.68 3.17 45.93 0.15 1.82 16 9 H 0.08 2.59 7.21 -2.38 -0.02 2.58 16 10 N -0.66 -24.68 4.29 -468.11 -2.01 -26.69 16 11 C 0.19 8.29 2.06 44.17 0.09 8.39 16 12 H 0.00 -0.13 6.92 -2.38 -0.02 -0.15 16 13 C -0.13 -5.56 8.88 71.98 0.64 -4.92 16 14 C -0.52 -28.86 9.18 25.60 0.23 -28.62 16 15 H 0.04 2.56 7.86 -2.91 -0.02 2.54 16 16 C 0.02 0.87 5.45 84.65 0.46 1.33 16 17 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 18 Si 0.95 44.56 24.37 68.60 1.67 46.23 16 19 H -0.27 -11.99 6.86 99.48 0.68 -11.31 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 22 H 0.06 1.01 7.63 -2.39 -0.02 0.99 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 1.37 7.69 -2.39 -0.02 1.35 16 26 H 0.06 1.85 7.63 -2.39 -0.02 1.83 16 27 H 0.06 1.41 7.74 -2.39 -0.02 1.39 16 28 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.06 1.78 7.55 -2.39 -0.02 1.76 16 31 H 0.34 13.16 7.36 -89.69 -0.66 12.50 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.27 3.25 -2.38 -0.01 1.26 16 34 H 0.05 1.96 7.50 -2.38 -0.02 1.94 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -61.58 270.11 1.93 -59.65 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.32 Total: 18.64 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.38 Total: -26.32 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.71 Total: -84.74 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.74 Total: -13.46 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Total: -61.58 1.93 -59.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699895169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.010 kcal (2) G-P(sol) polarization free energy of solvation -61.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds