Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 H 1.08992 * 110.45285 * 52.26386 * 3 2 1 5 5 C 1.54476 * 110.51011 * 289.51017 * 3 2 1 6 6 O 1.44430 * 104.80142 * 217.37489 * 5 3 2 7 7 C 1.44417 * 105.27435 * 40.51430 * 6 5 3 8 8 C 1.54478 * 104.80515 * 319.48928 * 7 6 5 9 9 H 1.09000 * 110.62361 * 265.27665 * 8 7 6 10 10 N 1.46899 * 110.51550 * 142.62663 * 8 7 6 11 11 C 1.46898 * 111.00236 * 157.35228 * 10 8 7 12 12 H 1.08992 * 109.47033 * 34.99849 * 11 10 8 13 13 C 1.53001 * 109.47138 * 274.99782 * 11 10 8 14 14 C 1.50702 * 109.47129 * 155.00098 * 11 10 8 15 15 H 1.07997 * 120.00228 * 31.73767 * 14 11 10 16 16 C 1.37875 * 119.99653 * 211.74463 * 14 11 10 17 17 N 1.31519 * 119.99502 * 179.72158 * 16 14 11 18 18 Si 1.86796 * 120.00406 * 359.72300 * 16 14 11 19 19 H 1.48496 * 109.47195 * 88.80365 * 18 16 14 20 20 H 1.48495 * 109.47360 * 208.80484 * 18 16 14 21 21 H 1.48504 * 109.46734 * 328.80434 * 18 16 14 22 22 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46741 * 299.99666 * 1 2 3 24 24 H 1.08997 * 109.47649 * 59.99732 * 1 2 3 25 25 H 1.09003 * 109.46741 * 240.00334 * 2 1 3 26 26 H 1.08997 * 109.47649 * 120.00267 * 2 1 3 27 27 H 1.08996 * 110.37636 * 336.20806 * 5 3 2 28 28 H 1.09005 * 110.37127 * 98.43537 * 5 3 2 29 29 H 1.08999 * 110.37287 * 200.65521 * 7 6 5 30 30 H 1.09007 * 110.37362 * 78.31847 * 7 6 5 31 31 H 1.00904 * 110.99703 * 281.30518 * 10 8 7 32 32 H 1.09002 * 109.46973 * 55.84103 * 13 11 10 33 33 H 1.08994 * 109.47244 * 175.84741 * 13 11 10 34 34 H 1.09005 * 109.46790 * 295.84562 * 13 11 10 35 35 H 0.97003 * 119.99681 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5777 2.0099 0.8076 5 6 1.7649 2.1139 -1.3638 6 8 2.9213 2.9445 -1.6061 7 6 4.0522 2.1585 -1.1714 8 6 3.5794 1.4724 0.1294 9 1 3.8781 2.0548 1.0010 10 7 4.1154 0.1074 0.2157 11 6 4.1475 -0.3585 1.6085 12 1 3.2892 0.0440 2.1461 13 6 5.4381 0.1200 2.2766 14 6 4.0963 -1.8644 1.6357 15 1 4.5413 -2.4345 0.8336 16 6 3.4812 -2.5143 2.6846 17 7 3.4318 -3.8284 2.7056 18 14 2.7181 -1.5286 4.0757 19 1 1.3078 -1.2078 3.7395 20 1 2.7595 -2.3257 5.3280 21 1 3.4807 -0.2685 4.2657 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6685 1.3602 -2.1452 28 1 0.8624 2.7229 -1.3117 29 1 4.9079 2.8032 -0.9710 30 1 4.3067 1.4115 -1.9234 31 1 3.5868 -0.5260 -0.3654 32 1 5.5108 1.2043 2.1916 33 1 5.4284 -0.1621 3.3294 34 1 6.2945 -0.3412 1.7847 35 1 2.9993 -4.2857 3.4438 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699895170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -51.708758 kcal Electronic energy + Delta-G solvation = -15351.013512 eV Core-core repulsion = 12962.739664 eV Total energy + Delta-G solvation = -2388.273848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67544 -36.04102 -33.75814 -32.28107 -30.25969 -28.09223 -26.90786 -25.15546 -23.52489 -21.82223 -20.18762 -18.92214 -17.09707 -16.33761 -15.38206 -15.26924 -14.76122 -14.07901 -13.81830 -13.48896 -12.85643 -12.62559 -12.55590 -12.28578 -11.94956 -11.53046 -11.19636 -11.09520 -10.92139 -10.57085 -10.52990 -10.36686 -10.21265 -10.00792 -9.76938 -9.54386 -9.03124 -8.67166 -7.48392 -6.16620 -4.17449 3.19188 3.29809 3.32164 4.23359 4.32455 4.79113 4.94898 5.09100 5.23382 5.25939 5.50287 5.54961 5.60988 5.70254 5.76396 5.98958 6.05922 6.07295 6.14850 6.28038 6.35193 6.41419 6.53378 6.62765 6.72059 6.82327 6.83335 7.04723 7.37099 7.57215 7.90964 8.34354 8.59666 8.92518 9.47089 10.96270 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.011200 C = 0.009647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.111846 B = 2499.355233 C = 2901.880251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.152 4.152 4 H 0.075 0.925 5 C 0.054 3.946 6 O -0.386 6.386 7 C 0.054 3.946 8 C 0.057 3.943 9 H 0.082 0.918 10 N -0.676 5.676 11 C 0.181 3.819 12 H 0.006 0.994 13 C -0.129 4.129 14 C -0.518 4.518 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.262 1.262 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.346 0.654 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 9.798 -4.676 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.173 4.173 4 H 0.094 0.906 5 C -0.023 4.023 6 O -0.304 6.304 7 C -0.023 4.023 8 C -0.055 4.055 9 H 0.100 0.900 10 N -0.310 5.310 11 C 0.073 3.927 12 H 0.023 0.977 13 C -0.187 4.187 14 C -0.556 4.556 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.695 3.305 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.187 1.187 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.258 10.031 -4.658 11.530 hybrid contribution -1.422 0.017 1.196 1.858 sum -4.679 10.048 -3.463 11.613 Atomic orbital electron populations 1.21750 0.96248 1.01643 1.00870 1.21781 0.95514 0.95077 1.04367 1.23199 0.98563 0.97578 0.97959 0.90618 1.23421 0.89413 0.93819 0.95667 1.89057 1.16142 1.39973 1.85231 1.23450 0.89107 0.94422 0.95309 1.22981 0.90746 0.93652 0.98111 0.90014 1.60714 1.56929 1.00735 1.12602 1.19545 0.92737 0.95676 0.84730 0.97678 1.21920 1.00308 0.97094 0.99422 1.21047 1.36950 0.88741 1.08856 0.90239 1.24975 0.95416 0.94687 0.97623 1.69893 1.43910 1.07287 1.32153 0.87019 0.80098 0.80890 0.82503 1.20252 1.21346 1.18659 0.92544 0.93233 0.93335 0.91453 0.88915 0.92396 0.89938 0.89376 0.91721 0.83144 0.96139 0.94006 0.92923 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.79 37.16 0.36 -1.75 16 2 C -0.13 -2.16 3.98 -26.73 -0.11 -2.26 16 3 C -0.15 -2.38 3.04 -89.05 -0.27 -2.65 16 4 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 5 C 0.05 0.75 6.52 37.93 0.25 1.00 16 6 O -0.39 -6.09 11.65 -35.23 -0.41 -6.50 16 7 C 0.05 0.83 7.35 37.93 0.28 1.11 16 8 C 0.06 0.97 3.18 -66.15 -0.21 0.76 16 9 H 0.08 1.43 7.19 -51.93 -0.37 1.06 16 10 N -0.68 -13.27 5.88 -99.32 -0.58 -13.86 16 11 C 0.18 4.09 0.90 -68.86 -0.06 4.03 16 12 H 0.01 0.13 4.42 -51.93 -0.23 -0.10 16 13 C -0.13 -2.78 9.22 37.16 0.34 -2.44 16 14 C -0.52 -13.77 8.44 -34.44 -0.29 -14.06 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 18 Si 0.87 20.82 26.47 -169.99 -4.50 16.32 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.26 -6.07 6.09 56.52 0.34 -5.73 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.59 7.64 -51.93 -0.40 0.19 16 25 H 0.07 1.10 6.83 -51.93 -0.35 0.74 16 26 H 0.09 1.88 5.23 -51.93 -0.27 1.61 16 27 H 0.06 0.78 7.74 -51.93 -0.40 0.37 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.98 8.06 -51.92 -0.42 0.56 16 31 H 0.35 6.88 5.57 -39.29 -0.22 6.66 16 32 H 0.02 0.38 7.42 -51.93 -0.39 0.00 16 33 H 0.04 0.91 6.92 -51.93 -0.36 0.55 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 268.40 15.07 4.04 4.04 Total: -1.00 -28.07 268.40 -6.04 -34.11 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.56 Total: 5.76 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 0.20 Total: -14.27 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.19 Total: -39.46 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.41 Total: -6.50 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.50 Total: 16.32 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.07 -6.04 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699895170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.596 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds