Wall clock time and date at job start Mon Mar 30 2020 03:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 H 1.08992 * 110.45285 * 52.26386 * 3 2 1 5 5 C 1.54476 * 110.51011 * 289.51017 * 3 2 1 6 6 O 1.44430 * 104.80142 * 217.37489 * 5 3 2 7 7 C 1.44417 * 105.27435 * 40.51430 * 6 5 3 8 8 C 1.54478 * 104.80515 * 319.48928 * 7 6 5 9 9 H 1.09000 * 110.62361 * 265.27665 * 8 7 6 10 10 N 1.46899 * 110.51550 * 142.62663 * 8 7 6 11 11 C 1.46898 * 111.00236 * 157.35228 * 10 8 7 12 12 H 1.08992 * 109.47033 * 34.99849 * 11 10 8 13 13 C 1.53001 * 109.47138 * 274.99782 * 11 10 8 14 14 C 1.50702 * 109.47129 * 155.00098 * 11 10 8 15 15 H 1.07997 * 120.00228 * 31.73767 * 14 11 10 16 16 C 1.37875 * 119.99653 * 211.74463 * 14 11 10 17 17 N 1.31519 * 119.99502 * 179.72158 * 16 14 11 18 18 Si 1.86796 * 120.00406 * 359.72300 * 16 14 11 19 19 H 1.48496 * 109.47195 * 88.80365 * 18 16 14 20 20 H 1.48495 * 109.47360 * 208.80484 * 18 16 14 21 21 H 1.48504 * 109.46734 * 328.80434 * 18 16 14 22 22 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46741 * 299.99666 * 1 2 3 24 24 H 1.08997 * 109.47649 * 59.99732 * 1 2 3 25 25 H 1.09003 * 109.46741 * 240.00334 * 2 1 3 26 26 H 1.08997 * 109.47649 * 120.00267 * 2 1 3 27 27 H 1.08996 * 110.37636 * 336.20806 * 5 3 2 28 28 H 1.09005 * 110.37127 * 98.43537 * 5 3 2 29 29 H 1.08999 * 110.37287 * 200.65521 * 7 6 5 30 30 H 1.09007 * 110.37362 * 78.31847 * 7 6 5 31 31 H 1.00904 * 110.99703 * 281.30518 * 10 8 7 32 32 H 1.09002 * 109.46973 * 55.84103 * 13 11 10 33 33 H 1.08994 * 109.47244 * 175.84741 * 13 11 10 34 34 H 1.09005 * 109.46790 * 295.84562 * 13 11 10 35 35 H 0.97003 * 119.99681 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5777 2.0099 0.8076 5 6 1.7649 2.1139 -1.3638 6 8 2.9213 2.9445 -1.6061 7 6 4.0522 2.1585 -1.1714 8 6 3.5794 1.4724 0.1294 9 1 3.8781 2.0548 1.0010 10 7 4.1154 0.1074 0.2157 11 6 4.1475 -0.3585 1.6085 12 1 3.2892 0.0440 2.1461 13 6 5.4381 0.1200 2.2766 14 6 4.0963 -1.8644 1.6357 15 1 4.5413 -2.4345 0.8336 16 6 3.4812 -2.5143 2.6846 17 7 3.4318 -3.8284 2.7056 18 14 2.7181 -1.5286 4.0757 19 1 1.3078 -1.2078 3.7395 20 1 2.7595 -2.3257 5.3280 21 1 3.4807 -0.2685 4.2657 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6685 1.3602 -2.1452 28 1 0.8624 2.7229 -1.3117 29 1 4.9079 2.8032 -0.9710 30 1 4.3067 1.4115 -1.9234 31 1 3.5868 -0.5260 -0.3654 32 1 5.5108 1.2043 2.1916 33 1 5.4284 -0.1621 3.3294 34 1 6.2945 -0.3412 1.7847 35 1 2.9993 -4.2857 3.4438 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699895170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:18 Heat of formation + Delta-G solvation = -71.382026 kcal Electronic energy + Delta-G solvation = -15351.866609 eV Core-core repulsion = 12962.739664 eV Total energy + Delta-G solvation = -2389.126945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96336 -37.57870 -35.25035 -34.14589 -31.86624 -29.30773 -28.36646 -27.14997 -24.72779 -23.10849 -21.93723 -20.33998 -19.04075 -17.72581 -16.80587 -16.62341 -16.26816 -15.57043 -15.43666 -14.85842 -14.59213 -14.23159 -13.98577 -13.81562 -13.18882 -13.03974 -12.92212 -12.61296 -12.40121 -12.27158 -12.06951 -11.87691 -11.71914 -11.50362 -11.32254 -10.98513 -10.79036 -10.70423 -9.07303 -8.30663 -6.35018 1.28995 1.33344 1.42439 2.30679 2.99835 3.08123 3.47378 3.68346 3.84765 3.99484 4.30095 4.31594 4.34698 4.50703 4.54067 4.59745 4.81753 4.85617 4.88465 4.90472 4.92608 4.99466 5.05237 5.14505 5.22664 5.29223 5.41793 5.51807 5.69975 5.78305 6.07892 6.54352 6.70000 6.85269 7.33930 8.85891 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.011200 C = 0.009647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.111846 B = 2499.355233 C = 2901.880251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.148 4.148 4 H 0.081 0.919 5 C 0.057 3.943 6 O -0.393 6.393 7 C 0.061 3.939 8 C 0.052 3.948 9 H 0.080 0.920 10 N -0.676 5.676 11 C 0.188 3.812 12 H 0.005 0.995 13 C -0.127 4.127 14 C -0.512 4.512 15 H 0.038 0.962 16 C 0.023 3.977 17 N -0.943 5.943 18 Si 0.927 3.073 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.245 1.245 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.343 0.657 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 12.205 -4.779 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.169 4.169 4 H 0.099 0.901 5 C -0.020 4.020 6 O -0.312 6.312 7 C -0.016 4.016 8 C -0.060 4.060 9 H 0.098 0.902 10 N -0.310 5.310 11 C 0.079 3.921 12 H 0.023 0.977 13 C -0.185 4.185 14 C -0.550 4.550 15 H 0.056 0.944 16 C -0.175 4.175 17 N -0.583 5.583 18 Si 0.751 3.249 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.169 1.169 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.114 12.468 -4.777 13.971 hybrid contribution -1.120 -0.757 1.128 1.761 sum -5.234 11.711 -3.649 13.337 Atomic orbital electron populations 1.21728 0.94361 1.01741 1.02338 1.21676 0.97214 0.95375 1.02218 1.23142 0.97347 0.96988 0.99382 0.90090 1.23508 0.89726 0.94147 0.94577 1.89061 1.16587 1.40333 1.85200 1.23389 0.89523 0.94528 0.94190 1.23074 0.91970 0.91806 0.99129 0.90155 1.60639 1.57556 1.02094 1.10706 1.19375 0.93284 0.92844 0.86551 0.97728 1.21849 0.99167 0.98789 0.98715 1.21208 1.35581 0.90967 1.07283 0.94412 1.25727 0.96128 0.95432 1.00243 1.70036 1.45767 1.09192 1.33346 0.86059 0.79759 0.79959 0.79098 1.19280 1.21512 1.16860 0.93207 0.92879 0.90713 0.91832 0.92855 0.91687 0.87591 0.87982 0.91793 0.83564 0.93424 0.94572 0.93688 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.79 71.98 0.70 -3.12 16 2 C -0.13 -4.06 3.98 30.60 0.12 -3.93 16 3 C -0.15 -4.26 3.04 -9.78 -0.03 -4.29 16 4 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 5 C 0.06 1.41 6.52 72.48 0.47 1.88 16 6 O -0.39 -11.15 11.65 -148.98 -1.74 -12.88 16 7 C 0.06 1.70 7.35 72.48 0.53 2.24 16 8 C 0.05 1.64 3.18 45.93 0.15 1.79 16 9 H 0.08 2.59 7.19 -2.39 -0.02 2.58 16 10 N -0.68 -26.05 5.88 -468.13 -2.75 -28.80 16 11 C 0.19 8.38 0.90 44.17 0.04 8.42 16 12 H 0.01 0.23 4.42 -2.39 -0.01 0.22 16 13 C -0.13 -5.27 9.22 71.98 0.66 -4.61 16 14 C -0.51 -27.85 8.44 25.60 0.22 -27.63 16 15 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 16 C 0.02 1.29 5.47 84.65 0.46 1.75 16 17 N -0.94 -57.23 13.96 21.45 0.30 -56.94 16 18 Si 0.93 42.80 26.47 68.60 1.82 44.61 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.25 -10.55 6.09 99.48 0.61 -9.95 16 22 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.58 7.64 -2.39 -0.02 1.56 16 25 H 0.06 2.03 6.83 -2.39 -0.02 2.02 16 26 H 0.05 2.14 5.23 -2.39 -0.01 2.13 16 27 H 0.06 1.53 7.74 -2.39 -0.02 1.51 16 28 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 1.81 8.06 -2.38 -0.02 1.79 16 31 H 0.34 13.64 5.57 -89.69 -0.50 13.14 16 32 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 33 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 34 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -60.39 268.40 1.42 -58.97 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.46 Total: 22.55 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.33 Total: -27.50 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.45 Total: -85.74 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.74 Total: -12.88 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.82 Total: 44.61 kcal Total: -60.39 1.42 -58.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699895170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.415 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds