Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09009 * 110.80374 * 54.30081 * 3 2 1 5 5 C 1.55000 * 110.90844 * 290.67497 * 3 2 1 6 6 O 1.44387 * 103.49031 * 204.77797 * 5 3 2 7 7 C 1.43750 * 106.97563 * 40.05468 * 6 5 3 8 8 C 1.54158 * 107.29916 * 333.46182 * 7 6 5 9 9 H 1.08994 * 110.48343 * 120.73136 * 8 7 6 10 10 N 1.46897 * 110.51947 * 243.39775 * 8 7 6 11 11 C 1.46903 * 110.99906 * 269.75033 * 10 8 7 12 12 H 1.09002 * 109.47219 * 324.99800 * 11 10 8 13 13 C 1.53000 * 109.46842 * 85.00001 * 11 10 8 14 14 C 1.50700 * 109.47208 * 204.99686 * 11 10 8 15 15 H 1.08003 * 120.00266 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00082 * 179.97438 * 14 11 10 17 17 N 1.31522 * 120.00103 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 120.00139 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.46840 * 60.00293 * 18 16 14 20 20 H 1.48503 * 109.47021 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46737 * 299.99812 * 18 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09002 * 110.61356 * 323.27339 * 5 3 2 28 28 H 1.08993 * 110.61819 * 86.11763 * 5 3 2 29 29 H 1.08999 * 109.87557 * 92.91400 * 7 6 5 30 30 H 1.09000 * 109.87487 * 214.06687 * 7 6 5 31 31 H 1.00901 * 111.00612 * 33.69927 * 10 8 7 32 32 H 1.08992 * 109.47382 * 60.00477 * 13 11 10 33 33 H 1.09006 * 109.47082 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.47201 * 299.99933 * 13 11 10 35 35 H 0.97000 * 119.99879 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6085 2.0057 0.8275 5 6 1.7425 2.1343 -1.3547 6 8 2.7453 3.1703 -1.4312 7 6 3.9690 2.6079 -0.9284 8 6 3.5868 1.4815 0.0523 9 1 4.0039 0.5303 -0.2782 10 7 4.0473 1.8024 1.4098 11 6 5.4024 1.2848 1.6421 12 1 5.5255 0.3390 1.1144 13 6 6.4295 2.2944 1.1257 14 6 5.6106 1.0670 3.1187 15 1 4.8157 1.2903 3.8149 16 6 6.8155 0.5816 3.5807 17 7 7.7834 0.3091 2.7329 18 14 7.0734 0.3109 5.4110 19 1 6.0763 -0.6689 5.9117 20 1 8.4433 -0.2123 5.6458 21 1 6.9061 1.5992 6.1302 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8552 1.4295 -2.1785 28 1 0.7413 2.5652 -1.3538 29 1 4.5551 2.1999 -1.7518 30 1 4.5421 3.3743 -0.4067 31 1 4.0058 2.7960 1.5804 32 1 6.3065 3.2401 1.6534 33 1 7.4349 1.9105 1.2985 34 1 6.2789 2.4520 0.0577 35 1 8.6309 -0.0328 3.0580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699895171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -78.196048 kcal Electronic energy + Delta-G solvation = -14883.579408 eV Core-core repulsion = 12494.156985 eV Total energy + Delta-G solvation = -2389.422423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77578 -37.36739 -35.49016 -34.33190 -31.22637 -29.18565 -28.23218 -27.11014 -24.72003 -22.66852 -22.10454 -21.24310 -18.41089 -17.26884 -17.05432 -16.66928 -16.22084 -15.53844 -15.12618 -14.70373 -14.36484 -14.23235 -13.78740 -13.67374 -13.11241 -13.01201 -12.80325 -12.76558 -12.30994 -12.22527 -12.08720 -11.96365 -11.71989 -11.57475 -11.37558 -10.95719 -10.71535 -10.48038 -8.97075 -8.10202 -6.21318 1.43150 1.44438 1.52254 2.43477 2.97269 3.18170 3.48136 3.73595 3.88772 4.08168 4.17476 4.32343 4.46408 4.56531 4.61536 4.68848 4.74073 4.80640 4.87784 4.92369 4.97549 5.09144 5.18858 5.25991 5.35895 5.45656 5.51133 5.68923 5.76856 5.93346 6.26669 6.63212 6.77963 6.93001 7.48631 8.95039 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037948 B = 0.007879 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.682061 B = 3552.888018 C = 4057.665306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.081 0.919 5 C 0.051 3.949 6 O -0.397 6.397 7 C 0.024 3.976 8 C 0.058 3.942 9 H 0.071 0.929 10 N -0.673 5.673 11 C 0.218 3.782 12 H 0.003 0.997 13 C -0.159 4.159 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.333 0.667 32 H 0.030 0.970 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 1.339 -6.945 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.123 4.123 4 H 0.100 0.900 5 C -0.026 4.026 6 O -0.316 6.316 7 C -0.054 4.054 8 C -0.053 4.053 9 H 0.090 0.910 10 N -0.302 5.302 11 C 0.109 3.891 12 H 0.021 0.979 13 C -0.219 4.219 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.331 0.931 -6.726 13.210 hybrid contribution 1.313 0.170 0.513 1.420 sum -10.018 1.101 -6.212 11.839 Atomic orbital electron populations 1.21748 0.93950 1.02256 1.02282 1.21389 0.97158 0.94320 1.01711 1.22720 0.93442 0.97887 0.98282 0.90017 1.23811 0.92949 0.89852 0.95942 1.88804 1.20341 1.37135 1.85333 1.24066 0.87473 0.96680 0.97192 1.23101 0.96279 0.97404 0.88543 0.91039 1.60690 1.26863 1.19307 1.23380 1.18993 0.83077 0.92132 0.94856 0.97904 1.22345 1.03884 0.98844 0.96819 1.21435 0.98434 1.42513 0.93218 0.92775 1.25702 0.95753 0.95438 1.01982 1.70000 1.04877 1.45826 1.35524 0.85594 0.76941 0.78530 0.80428 1.19934 1.20969 1.19726 0.91382 0.92875 0.91980 0.93291 0.91589 0.91116 0.87052 0.92351 0.90510 0.84897 0.95066 0.92063 0.95034 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.79 71.98 0.70 -2.10 16 2 C -0.11 -2.73 5.33 30.59 0.16 -2.57 16 3 C -0.10 -2.94 2.85 -9.49 -0.03 -2.96 16 4 H 0.08 2.46 8.06 -2.38 -0.02 2.44 16 5 C 0.05 1.24 6.49 72.67 0.47 1.71 16 6 O -0.40 -12.38 11.52 -148.98 -1.72 -14.09 16 7 C 0.02 0.80 6.19 72.37 0.45 1.25 16 8 C 0.06 2.03 2.94 45.93 0.13 2.17 16 9 H 0.07 2.68 7.16 -2.39 -0.02 2.66 16 10 N -0.67 -28.19 6.03 -468.14 -2.82 -31.02 16 11 C 0.22 10.93 2.57 44.17 0.11 11.04 16 12 H 0.00 0.17 7.44 -2.39 -0.02 0.15 16 13 C -0.16 -7.60 8.40 71.98 0.60 -6.99 16 14 C -0.52 -28.78 8.84 25.60 0.23 -28.56 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.53 5.30 84.65 0.45 0.97 16 17 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 18 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H 0.07 1.08 7.58 -2.39 -0.02 1.06 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 27 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16 28 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.64 6.33 -2.39 -0.02 2.62 16 31 H 0.33 13.48 7.89 -89.69 -0.71 12.77 16 32 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 34 H 0.03 1.31 6.20 -2.39 -0.01 1.29 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -59.66 276.10 1.37 -58.29 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.35 Total: 19.66 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.29 Total: -26.04 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.58 Total: -83.93 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.72 Total: -14.09 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.66 1.37 -58.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699895171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.904 kcal (2) G-P(sol) polarization free energy of solvation -59.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds