Wall clock time and date at job start Mon Mar 30 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46951 * 2 1 4 4 C 1.53004 * 109.47181 * 120.00072 * 2 1 3 5 5 H 1.08997 * 109.04998 * 180.40663 * 4 2 1 6 6 C 1.51048 * 109.06209 * 61.40121 * 4 2 1 7 7 O 1.43443 * 107.56319 * 145.51087 * 6 4 2 8 8 C 1.36612 * 117.83990 * 82.09057 * 7 6 4 9 9 C 1.54710 * 110.78982 * 298.96118 * 8 7 6 10 10 C 1.50989 * 109.08460 * 73.33996 * 9 8 7 11 11 H 1.09004 * 108.74423 * 28.78441 * 10 9 8 12 12 C 1.50703 * 108.74994 * 147.01506 * 10 9 8 13 13 H 1.07997 * 119.99562 * 120.00334 * 12 10 9 14 14 C 1.37870 * 120.00079 * 300.00222 * 12 10 9 15 15 N 1.31513 * 120.00238 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00037 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47644 * 270.00351 * 16 14 12 18 18 H 1.48503 * 109.47139 * 150.00065 * 16 14 12 19 19 H 1.48500 * 109.46993 * 30.00226 * 16 14 12 20 20 N 1.47392 * 109.00464 * 299.38350 * 4 2 1 21 21 H 1.09002 * 109.47233 * 186.15484 * 1 2 3 22 22 H 1.09004 * 109.47168 * 306.15108 * 1 2 3 23 23 H 1.08998 * 109.47290 * 66.15194 * 1 2 3 24 24 H 1.09003 * 109.47210 * 240.00171 * 2 1 3 25 25 H 1.09002 * 109.47268 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47598 * 299.99943 * 3 2 1 27 27 H 1.09003 * 109.47311 * 60.00524 * 3 2 1 28 28 H 1.09004 * 109.83812 * 25.99493 * 6 4 2 29 29 H 1.08997 * 109.89262 * 265.06167 * 6 4 2 30 30 H 1.08997 * 109.21407 * 178.62464 * 8 7 6 31 31 H 1.08997 * 109.21383 * 59.29430 * 8 7 6 32 32 H 1.09005 * 109.53849 * 313.46118 * 9 8 7 33 33 H 1.09000 * 109.60565 * 193.26763 * 9 8 7 34 34 H 0.96998 * 119.99786 * 359.97438 * 15 14 12 35 35 H 1.00898 * 111.00529 * 35.59818 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1299 -0.7109 1.2460 6 6 1.5601 -2.1533 1.2226 7 8 2.5849 -2.9643 1.8139 8 6 2.6307 -3.0409 3.1771 9 6 2.8699 -1.6441 3.7979 10 6 1.6054 -0.8277 3.6786 11 1 0.7502 -1.5036 3.6836 12 6 1.5054 0.0876 4.8716 13 1 1.4737 1.1578 4.7299 14 6 1.4544 -0.4411 6.1438 15 7 1.4935 -1.7443 6.3164 16 14 1.3311 0.6935 7.6226 17 1 2.6954 1.0453 8.0918 18 1 0.5943 0.0064 8.7137 19 1 0.6055 1.9308 7.2381 20 7 1.5553 -0.0099 2.4457 21 1 -0.3634 -1.0218 0.1102 22 1 -0.3634 0.6063 0.8298 23 1 -0.3634 0.4155 -0.9399 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.3884 -2.4667 0.1928 29 1 0.6379 -2.2461 1.7960 30 1 3.4407 -3.7080 3.4719 31 1 1.6859 -3.4402 3.5458 32 1 3.6789 -1.1428 3.2666 33 1 3.1363 -1.7520 4.8493 34 1 1.5578 -2.3335 5.5485 35 1 0.6292 0.3612 2.2954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710009812.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:27 Heat of formation + Delta-G solvation = -72.338392 kcal Electronic energy + Delta-G solvation = -15524.631518 eV Core-core repulsion = 13135.463102 eV Total energy + Delta-G solvation = -2389.168416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17407 -37.84893 -36.69084 -33.50072 -31.77524 -28.95936 -28.13171 -27.71871 -25.24363 -23.36151 -22.05971 -19.98758 -19.20300 -17.62198 -17.29572 -16.95589 -16.38406 -15.64365 -15.48732 -15.10171 -14.26261 -14.21401 -13.79387 -13.57390 -13.21381 -13.17475 -12.90830 -12.61360 -12.35367 -12.07804 -11.94429 -11.80215 -11.74835 -11.57253 -11.48783 -10.92132 -10.57940 -10.19489 -9.00528 -8.55477 -6.32319 1.53089 1.61026 1.79287 2.55779 2.77431 3.17643 3.39621 3.79890 3.88664 4.02650 4.13640 4.18448 4.29212 4.39106 4.42469 4.56888 4.76948 4.78291 4.83665 4.89106 4.93133 5.05067 5.07272 5.13823 5.22830 5.42437 5.46006 5.56239 5.93947 6.15258 6.38959 6.55572 6.71913 6.77688 7.47215 8.79097 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.010580 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.215158 B = 2645.885364 C = 3212.987735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.134 4.134 4 C 0.064 3.936 5 H 0.064 0.936 6 C 0.040 3.960 7 O -0.393 6.393 8 C 0.081 3.919 9 C -0.147 4.147 10 C 0.213 3.787 11 H -0.047 1.047 12 C -0.598 4.598 13 H 0.046 0.954 14 C -0.032 4.032 15 N -0.939 5.939 16 Si 1.118 2.882 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.275 1.275 20 N -0.682 5.682 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.266 0.734 35 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 1.767 -11.749 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.192 4.192 4 C -0.046 4.046 5 H 0.082 0.918 6 C -0.037 4.037 7 O -0.311 6.311 8 C 0.003 3.997 9 C -0.186 4.186 10 C 0.105 3.895 11 H -0.029 1.029 12 C -0.636 4.636 13 H 0.064 0.936 14 C -0.230 4.230 15 N -0.578 5.578 16 Si 0.941 3.059 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.316 5.316 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.140 0.860 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.088 1.975 -10.094 10.286 hybrid contribution -0.821 -0.635 -1.211 1.595 sum -0.909 1.339 -11.305 11.420 Atomic orbital electron populations 1.21912 0.94753 1.01649 1.02544 1.21257 0.96241 0.97119 0.95905 1.21677 1.00520 0.95281 1.01682 1.22053 0.99831 0.91580 0.91113 0.91791 1.23383 0.89405 0.91916 0.98984 1.86306 1.54479 1.69809 1.20515 1.21798 1.00136 0.96479 0.81319 1.22371 0.99348 0.95827 1.01098 1.18825 0.91096 0.90998 0.88567 1.02925 1.22355 1.53951 0.94394 0.92924 0.93608 1.27130 0.93257 0.98950 1.03620 1.70874 1.48322 1.03709 1.34879 0.82900 0.77464 0.73295 0.72286 1.20245 1.20951 1.19967 1.60386 1.30706 1.39000 1.01474 0.92919 0.93571 0.90164 0.88865 0.93478 0.91196 0.93490 0.86015 0.94726 0.88146 0.96527 0.92977 0.91937 0.92309 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.66 71.98 0.62 -2.91 16 2 C -0.09 -2.22 2.53 -10.79 -0.03 -2.25 16 3 C -0.13 -3.43 9.03 71.98 0.65 -2.78 16 4 C 0.06 2.23 1.93 44.19 0.09 2.31 16 5 H 0.06 2.46 7.24 -2.39 -0.02 2.44 16 6 C 0.04 1.37 4.78 71.35 0.34 1.71 16 7 O -0.39 -15.25 9.95 -100.64 -1.00 -16.25 16 8 C 0.08 3.40 6.20 72.57 0.45 3.85 16 9 C -0.15 -7.20 4.25 30.52 0.13 -7.07 16 10 C 0.21 10.89 1.72 43.30 0.07 10.97 16 11 H -0.05 -2.60 6.33 -2.38 -0.02 -2.62 16 12 C -0.60 -34.09 8.75 25.60 0.22 -33.87 16 13 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 14 C -0.03 -1.80 5.03 84.65 0.43 -1.37 16 15 N -0.94 -56.41 12.77 21.44 0.27 -56.14 16 16 Si 1.12 50.87 29.90 68.60 2.05 52.92 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 N -0.68 -28.97 5.48 -476.30 -2.61 -31.58 16 21 H 0.05 1.22 6.92 -2.39 -0.02 1.20 16 22 H 0.05 1.22 6.49 -2.38 -0.02 1.20 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.40 7.53 -2.39 -0.02 1.38 16 28 H 0.12 3.24 7.57 -2.39 -0.02 3.22 16 29 H 0.03 1.30 6.73 -2.39 -0.02 1.29 16 30 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.02 0.75 7.46 -2.39 -0.02 0.73 16 32 H 0.05 2.53 7.24 -2.38 -0.02 2.51 16 33 H 0.06 3.42 5.65 -2.39 -0.01 3.40 16 34 H 0.27 15.84 5.31 -92.71 -0.49 15.35 16 35 H 0.33 13.64 6.37 -89.70 -0.57 13.07 16 Total: -1.00 -63.65 261.61 2.46 -61.18 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.77 Total: 21.27 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 2.98 Total: -31.41 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.34 Total: -87.71 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.00 Total: -16.25 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -63.65 2.46 -61.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710009812.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.154 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds