Wall clock time and date at job start Mon Mar 30 2020 02:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 C 1.52998 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.08991 * 110.56768 * 307.67908 * 4 3 2 6 6 C 1.54479 * 110.51044 * 70.35951 * 4 3 2 7 7 O 1.44433 * 104.80518 * 94.66492 * 6 4 3 8 8 C 1.44422 * 105.27452 * 40.51075 * 7 6 4 9 9 C 1.54481 * 104.80535 * 319.49061 * 8 7 6 10 10 H 1.08996 * 110.51163 * 265.33635 * 9 8 7 11 11 N 1.46902 * 110.63054 * 142.67979 * 9 8 7 12 12 C 1.46904 * 110.99848 * 90.29150 * 11 9 8 13 13 C 1.50698 * 109.46876 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99753 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00141 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99965 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46956 * 60.00279 * 17 15 13 19 19 H 1.48496 * 109.47300 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47089 * 300.00430 * 17 15 13 21 21 H 1.09002 * 109.46995 * 59.99629 * 1 2 3 22 22 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46805 * 300.00226 * 1 2 3 24 24 H 1.09002 * 109.46805 * 239.99774 * 2 1 3 25 25 H 1.09002 * 109.46995 * 120.00371 * 2 1 3 26 26 H 1.09002 * 109.47293 * 60.00073 * 3 2 1 27 27 H 1.09000 * 109.46808 * 300.00152 * 3 2 1 28 28 H 1.08997 * 110.37024 * 213.49486 * 6 4 3 29 29 H 1.08995 * 110.37315 * 335.83118 * 6 4 3 30 30 H 1.08995 * 110.37333 * 200.65712 * 8 7 6 31 31 H 1.08999 * 110.46531 * 78.36420 * 8 7 6 32 32 H 1.00900 * 110.99919 * 326.33678 * 11 9 8 33 33 H 1.09003 * 109.46732 * 300.00085 * 12 11 9 34 34 H 1.09000 * 109.47025 * 60.00050 * 12 11 9 35 35 H 0.96998 * 119.99921 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9533 0.8184 0.8067 6 6 4.1107 0.9562 -1.3636 7 8 4.3462 2.1642 -2.1194 8 6 4.9153 3.0982 -1.1763 9 6 4.1116 2.8840 0.1254 10 1 3.2893 3.5966 0.1883 11 7 4.9863 3.0044 1.2995 12 6 5.0306 4.3909 1.7830 13 6 5.9349 4.4749 2.9855 14 1 6.4278 3.5872 3.3535 15 6 6.1339 5.6852 3.6152 16 7 5.5341 6.7662 3.1667 17 14 7.2555 5.7895 5.1054 18 1 8.6234 5.3529 4.7269 19 1 7.3002 7.1910 5.5942 20 1 6.7339 4.9073 6.1801 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 5.0418 0.4059 -1.2281 29 1 3.3703 0.3331 -1.8651 30 1 4.7930 4.1206 -1.5339 31 1 5.9701 2.8783 -1.0115 32 1 5.9136 2.6625 1.0962 33 1 5.4132 5.0386 0.9941 34 1 4.0264 4.7110 2.0609 35 1 5.6738 7.6176 3.6100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710892280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:01 Heat of formation + Delta-G solvation = -88.123250 kcal Electronic energy + Delta-G solvation = -14462.092464 eV Core-core repulsion = 12072.239565 eV Total energy + Delta-G solvation = -2389.852899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.80728 -36.69298 -36.14598 -34.50248 -31.86484 -29.89309 -27.67272 -26.71675 -24.19567 -23.55817 -21.75806 -21.12025 -18.61440 -17.39460 -17.23164 -16.64955 -16.29519 -15.73193 -15.25412 -14.99383 -14.45255 -14.30015 -13.85423 -13.49686 -13.40470 -13.14143 -13.00943 -12.70577 -12.53553 -12.24161 -12.03718 -11.93240 -11.71613 -11.54758 -11.32766 -11.14217 -10.76808 -10.65145 -9.12992 -8.23400 -6.34991 1.41568 1.44909 1.52950 2.39443 2.94246 3.10235 3.46480 3.76278 3.81055 4.01063 4.09691 4.16167 4.32315 4.40256 4.51907 4.65666 4.76446 4.78132 4.80391 4.96415 5.02171 5.05626 5.13600 5.18079 5.25737 5.32291 5.45028 5.51596 5.59926 5.79309 6.00668 6.40341 6.67729 6.86317 7.36163 8.87955 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.006348 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.386663 B = 4409.595112 C = 4797.038622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.107 4.107 5 H 0.092 0.908 6 C 0.047 3.953 7 O -0.390 6.390 8 C 0.024 3.976 9 C 0.056 3.944 10 H 0.065 0.935 11 N -0.672 5.672 12 C 0.209 3.791 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.337 0.663 33 H -0.036 1.036 34 H -0.002 1.002 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -12.700 -7.233 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.126 4.126 5 H 0.110 0.890 6 C -0.029 4.029 7 O -0.309 6.309 8 C -0.055 4.055 9 C -0.056 4.056 10 H 0.084 0.916 11 N -0.303 5.303 12 C 0.082 3.918 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.155 0.845 33 H -0.018 1.018 34 H 0.016 0.984 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.651 -12.668 -6.984 15.530 hybrid contribution 1.033 1.160 0.297 1.581 sum -4.618 -11.508 -6.687 14.088 Atomic orbital electron populations 1.21772 0.95365 1.02143 1.01653 1.21545 0.96288 0.95337 1.02540 1.21551 0.93096 0.98158 1.01356 1.22526 0.96739 0.94925 0.98424 0.88969 1.23716 1.00928 0.87398 0.90879 1.89054 1.83153 1.24850 1.33812 1.24131 0.97182 0.94182 0.90012 1.23051 0.96001 0.97911 0.88605 0.91616 1.60643 1.15329 1.22865 1.31505 1.19232 0.95102 0.84070 0.93438 1.21514 1.27948 0.94652 1.13480 0.91603 1.25951 0.97688 0.95105 1.00874 1.70082 1.44745 1.00021 1.42566 0.85375 0.79055 0.77095 0.78708 1.19013 1.20870 1.19352 0.92656 0.91560 0.93387 0.90744 0.91869 0.93221 0.92171 0.91375 0.86970 0.90087 0.91937 0.84461 1.01801 0.98422 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.33 5.80 30.59 0.18 -2.15 16 3 C -0.10 -2.64 4.45 30.59 0.14 -2.50 16 4 C -0.11 -3.00 2.90 -9.78 -0.03 -3.03 16 5 H 0.09 2.64 7.97 -2.39 -0.02 2.62 16 6 C 0.05 1.16 7.04 72.48 0.51 1.67 16 7 O -0.39 -12.15 11.65 -148.98 -1.74 -13.88 16 8 C 0.02 0.79 7.32 72.49 0.53 1.32 16 9 C 0.06 1.99 3.09 45.93 0.14 2.13 16 10 H 0.07 2.59 7.41 -2.39 -0.02 2.58 16 11 N -0.67 -28.53 6.24 -490.31 -3.06 -31.59 16 12 C 0.21 11.18 5.30 85.56 0.45 11.63 16 13 C -0.54 -30.52 9.32 25.60 0.24 -30.28 16 14 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.00 0.12 5.46 84.66 0.46 0.59 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 1.23 6.73 -2.39 -0.02 1.22 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.11 2.23 6.48 -2.39 -0.02 2.22 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.06 2.02 7.56 -2.39 -0.02 2.00 16 32 H 0.34 13.45 8.09 -89.69 -0.73 12.73 16 33 H -0.04 -2.03 8.14 -2.39 -0.02 -2.05 16 34 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -62.80 284.31 1.17 -61.63 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.32 Total: 16.57 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.34 Total: -22.60 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.77 Total: -87.79 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.74 Total: -13.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.80 1.17 -61.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710892280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.495 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds