Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47132 * 2 1 4 4 C 1.53004 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.45659 * 52.38837 * 4 3 2 6 6 C 1.54480 * 110.62341 * 289.70504 * 4 3 2 7 7 O 1.44422 * 104.80364 * 217.31661 * 6 4 3 8 8 C 1.44432 * 105.27272 * 40.51734 * 7 6 4 9 9 C 1.54475 * 104.80060 * 319.48449 * 8 7 6 10 10 H 1.08998 * 110.63042 * 142.67892 * 9 8 7 11 11 N 1.46500 * 110.51383 * 265.33592 * 9 8 7 12 12 C 1.46496 * 120.00236 * 54.64115 * 11 9 8 13 13 C 1.36944 * 119.99786 * 234.64388 * 11 9 8 14 14 H 1.08002 * 120.00220 * 338.85498 * 13 11 9 15 15 C 1.38812 * 119.99599 * 158.58132 * 13 11 9 16 16 N 1.31617 * 120.00026 * 348.73729 * 15 13 11 17 17 Si 1.86805 * 119.99778 * 168.74230 * 15 13 11 18 18 H 1.48502 * 109.47104 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47200 * 119.99866 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99900 * 17 15 13 21 21 H 1.08994 * 109.46516 * 60.00281 * 1 2 3 22 22 H 1.08995 * 109.47012 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46832 * 300.00358 * 1 2 3 24 24 H 1.08998 * 109.47562 * 239.99753 * 2 1 3 25 25 H 1.09008 * 109.47000 * 119.99351 * 2 1 3 26 26 H 1.08998 * 109.47098 * 59.99469 * 3 2 1 27 27 H 1.09008 * 109.46648 * 299.99566 * 3 2 1 28 28 H 1.08997 * 110.37773 * 336.15356 * 6 4 3 29 29 H 1.09004 * 110.37005 * 98.38200 * 6 4 3 30 30 H 1.09003 * 110.37060 * 200.65556 * 8 7 6 31 31 H 1.08994 * 110.37066 * 78.31592 * 8 7 6 32 32 H 1.09001 * 109.47247 * 264.93292 * 12 11 9 33 33 H 1.09000 * 109.46920 * 24.93850 * 12 11 9 34 34 H 1.09000 * 109.47092 * 144.93124 * 12 11 9 35 35 H 0.97007 * 119.99677 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9507 0.8194 -0.8099 6 6 4.1148 0.9548 1.3602 7 8 5.2841 1.7671 1.6021 8 6 4.9191 3.0969 1.1727 9 6 4.1114 2.8841 -0.1268 10 1 3.2890 3.5968 -0.1888 11 7 4.9827 3.0045 -1.2984 12 6 6.1897 2.1806 -1.4014 13 6 4.6689 3.8873 -2.2972 14 1 3.6533 4.2369 -2.4095 15 6 5.6575 4.3371 -3.1616 16 7 6.9239 4.0976 -2.8948 17 14 5.1903 5.2825 -4.7036 18 1 3.7131 5.4176 -4.7729 19 1 5.8099 6.6314 -4.6640 20 1 5.6765 4.5494 -5.9000 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6766 1.9563 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.3741 1.1128 2.1441 29 1 4.3878 -0.0990 1.3040 30 1 5.8119 3.6892 0.9719 31 1 4.3019 3.5834 1.9278 32 1 7.0466 2.7437 -1.0317 33 1 6.0644 1.2766 -0.8055 34 1 6.3559 1.9086 -2.4437 35 1 7.6147 4.4123 -3.4988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710980988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = -56.255078 kcal Electronic energy + Delta-G solvation = -15101.371487 eV Core-core repulsion = 12712.900496 eV Total energy + Delta-G solvation = -2388.470991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68235 -36.84656 -36.15705 -33.42570 -31.55109 -29.47890 -27.99063 -26.68904 -24.87406 -23.35380 -21.67017 -20.69209 -18.82731 -17.44081 -16.76220 -16.55069 -16.29864 -15.55026 -15.20149 -14.79170 -14.42709 -14.06486 -13.70381 -13.43196 -13.18508 -12.93837 -12.75856 -12.45780 -12.29084 -12.22395 -12.05868 -11.81718 -11.70609 -11.53864 -11.44577 -11.28574 -10.73241 -10.53640 -8.78246 -7.82733 -5.31167 1.45323 1.46253 1.56954 2.49222 3.16377 3.30343 3.56883 3.82811 4.04597 4.13830 4.28168 4.31743 4.46609 4.50475 4.52647 4.79074 4.84913 4.87631 4.91570 4.94126 5.01525 5.10492 5.19027 5.25883 5.34189 5.39279 5.50322 5.55598 5.62743 5.71756 6.00668 6.31128 7.13752 7.86078 8.31542 9.20707 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030429 B = 0.009450 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.960582 B = 2962.152162 C = 3599.159453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.132 4.132 5 H 0.061 0.939 6 C 0.053 3.947 7 O -0.399 6.399 8 C 0.034 3.966 9 C 0.142 3.858 10 H 0.079 0.921 11 N -0.605 5.605 12 C 0.191 3.809 13 C -0.262 4.262 14 H 0.075 0.925 15 C -0.057 4.057 16 N -0.942 5.942 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.293 1.293 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.077 0.923 32 H -0.003 1.003 33 H 0.023 0.977 34 H 0.012 0.988 35 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -6.588 7.393 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.152 4.152 5 H 0.080 0.920 6 C -0.024 4.024 7 O -0.319 6.319 8 C -0.045 4.045 9 C 0.034 3.966 10 H 0.097 0.903 11 N -0.327 5.327 12 C 0.046 3.954 13 C -0.392 4.392 14 H 0.093 0.907 15 C -0.251 4.251 16 N -0.589 5.589 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.220 1.220 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.015 0.985 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.731 -6.613 7.380 14.606 hybrid contribution 0.327 0.747 -1.170 1.426 sum -10.404 -5.866 6.209 13.461 Atomic orbital electron populations 1.21750 0.94896 1.02051 1.01913 1.21530 0.96558 0.95829 1.01998 1.21524 0.92118 0.97847 1.02000 1.23013 0.97122 0.97218 0.97885 0.92022 1.23573 0.87590 0.95793 0.95405 1.89056 1.36981 1.20570 1.85249 1.23940 0.99606 0.84780 0.96150 1.22011 0.92546 0.95737 0.86275 0.90330 1.44171 1.25709 1.43870 1.18960 1.20320 0.87677 0.90711 0.96687 1.19669 0.93482 1.19242 1.06829 0.90709 1.25829 0.95092 1.00959 1.03267 1.70287 0.99466 1.51280 1.37902 0.85136 0.78075 0.77560 0.79275 1.18786 1.21899 1.22000 0.93318 0.91920 0.92004 0.93074 0.91008 0.90634 0.93083 0.90308 0.88828 0.92033 0.90501 0.98479 0.95829 0.96911 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.61 5.81 30.60 0.18 -2.43 16 3 C -0.10 -2.54 4.43 30.60 0.14 -2.40 16 4 C -0.13 -4.34 2.26 -9.78 -0.02 -4.36 16 5 H 0.06 2.35 7.20 -2.39 -0.02 2.33 16 6 C 0.05 1.55 6.52 72.49 0.47 2.02 16 7 O -0.40 -15.04 10.99 -148.98 -1.64 -16.68 16 8 C 0.03 1.30 6.78 72.48 0.49 1.79 16 9 C 0.14 5.77 3.25 46.01 0.15 5.92 16 10 H 0.08 3.09 7.51 -2.39 -0.02 3.07 16 11 N -0.61 -31.08 2.81 -697.12 -1.96 -33.04 16 12 C 0.19 10.14 7.90 127.77 1.01 11.15 16 13 C -0.26 -14.56 9.63 84.03 0.81 -13.75 16 14 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.06 -3.25 5.14 84.86 0.44 -2.81 16 16 N -0.94 -57.42 10.52 21.65 0.23 -57.20 16 17 Si 0.97 45.67 29.57 68.60 2.03 47.70 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.36 7.63 -2.38 -0.02 1.34 16 26 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.08 1.87 7.76 -2.39 -0.02 1.86 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.75 8.01 -2.39 -0.02 2.73 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.00 -0.18 7.39 -2.39 -0.02 -0.20 16 33 H 0.02 1.12 6.47 -2.39 -0.02 1.11 16 34 H 0.01 0.70 7.18 -2.39 -0.02 0.69 16 35 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -64.42 277.12 4.06 -60.36 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.03 Total: 5.70 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.37 Total: -6.84 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.73 Total: -90.23 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.64 Total: -16.68 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -64.42 4.06 -60.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710980988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.103 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds