Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.53005 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.45403 * 303.84976 * 4 3 2 6 6 C 1.54479 * 110.50931 * 66.45517 * 4 3 2 7 7 O 1.44426 * 104.80113 * 142.62567 * 6 4 3 8 8 C 1.44427 * 105.27439 * 319.48577 * 7 6 4 9 9 C 1.54480 * 104.80219 * 40.51464 * 8 7 6 10 10 H 1.09004 * 110.50752 * 217.37861 * 9 8 7 11 11 N 1.46491 * 110.62839 * 94.72480 * 9 8 7 12 12 C 1.46511 * 120.00143 * 305.28616 * 11 9 8 13 13 C 1.36937 * 120.00607 * 125.29001 * 11 9 8 14 14 H 1.08007 * 119.99515 * 20.37702 * 13 11 9 15 15 C 1.38804 * 120.00506 * 200.38682 * 13 11 9 16 16 N 1.31619 * 120.00065 * 14.95564 * 15 13 11 17 17 Si 1.86805 * 120.00168 * 194.95503 * 15 13 11 18 18 H 1.48506 * 109.46730 * 84.99982 * 17 15 13 19 19 H 1.48497 * 109.47272 * 204.99861 * 17 15 13 20 20 H 1.48499 * 109.47096 * 325.00306 * 17 15 13 21 21 H 1.08999 * 109.47648 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46755 * 299.99963 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99335 * 1 2 3 24 24 H 1.09004 * 109.46755 * 240.00037 * 2 1 3 25 25 H 1.09001 * 109.46980 * 120.00665 * 2 1 3 26 26 H 1.08997 * 109.46981 * 60.00685 * 3 2 1 27 27 H 1.08996 * 109.47428 * 299.99850 * 3 2 1 28 28 H 1.08993 * 110.37308 * 23.79054 * 6 4 3 29 29 H 1.09000 * 110.37341 * 261.45475 * 6 4 3 30 30 H 1.09002 * 110.37233 * 159.34567 * 8 7 6 31 31 H 1.09006 * 110.37081 * 281.68027 * 8 7 6 32 32 H 1.08998 * 109.46919 * 95.07766 * 12 11 9 33 33 H 1.08994 * 109.47236 * 215.07846 * 12 11 9 34 34 H 1.09001 * 109.46772 * 335.08575 * 12 11 9 35 35 H 0.97006 * 120.00464 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9513 0.8734 0.8473 6 6 4.1107 0.8646 -1.3274 7 8 5.2792 1.6589 -1.6267 8 6 4.9153 3.0144 -1.2862 9 6 4.1116 2.8892 0.0271 10 1 3.2892 3.6045 0.0412 11 7 4.9838 3.0888 1.1870 12 6 6.1909 2.2736 1.3448 13 6 4.6709 4.0371 2.1240 14 1 3.6578 4.4026 2.2049 15 6 5.6558 4.5289 2.9695 16 7 6.9254 4.3189 2.6932 17 14 5.1793 5.4890 4.4995 18 1 4.8983 4.5434 5.6096 19 1 6.2951 6.3891 4.8865 20 1 3.9657 6.2974 4.2187 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6768 1.9563 -0.8899 28 1 3.3677 0.9698 -2.1178 29 1 4.3859 -0.1825 -1.2011 30 1 5.8086 3.6188 -1.1282 31 1 4.2956 3.4494 -2.0704 32 1 7.0475 2.8103 0.9372 33 1 6.3579 2.0727 2.4030 34 1 6.0652 1.3313 0.8114 35 1 7.6137 4.6622 3.2843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710980989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -38.471527 kcal Electronic energy + Delta-G solvation = -15099.704913 eV Core-core repulsion = 12712.005075 eV Total energy + Delta-G solvation = -2387.699838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.17188 -35.06363 -34.86700 -31.59307 -30.09188 -27.82997 -25.86596 -25.51576 -23.03629 -22.08771 -20.34657 -19.07907 -16.79263 -15.82649 -15.25364 -15.10807 -14.65113 -14.09642 -13.58099 -13.27873 -12.93656 -12.62606 -12.21965 -12.07599 -11.56720 -11.29669 -11.14104 -10.85535 -10.74935 -10.49088 -10.42827 -10.26552 -10.15428 -10.06526 -9.87292 -9.72012 -9.15981 -8.49216 -6.73596 -5.69580 -3.14112 3.39487 3.45502 3.46749 4.49742 4.59689 5.02852 5.12068 5.22957 5.37771 5.41094 5.52638 5.59112 5.69546 5.82325 5.89715 5.97668 6.00596 6.05865 6.14043 6.26452 6.30979 6.35867 6.50683 6.55443 6.77593 6.87039 6.98974 7.43317 7.49903 7.79821 7.87322 8.41090 9.26131 9.90239 10.39544 11.34740 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.009421 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.363878 B = 2971.398001 C = 3608.471255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.141 4.141 5 H 0.086 0.914 6 C 0.052 3.948 7 O -0.379 6.379 8 C 0.026 3.974 9 C 0.154 3.846 10 H 0.075 0.925 11 N -0.589 5.589 12 C 0.165 3.835 13 C -0.258 4.258 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.905 5.905 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.006 0.994 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 -6.579 -6.070 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.162 4.162 5 H 0.104 0.896 6 C -0.026 4.026 7 O -0.298 6.298 8 C -0.053 4.053 9 C 0.044 3.956 10 H 0.093 0.907 11 N -0.309 5.309 12 C 0.021 3.979 13 C -0.387 4.387 14 H 0.086 0.914 15 C -0.197 4.197 16 N -0.550 5.550 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.507 -6.581 -6.033 12.331 hybrid contribution -0.324 0.629 0.938 1.175 sum -8.831 -5.952 -5.095 11.805 Atomic orbital electron populations 1.21775 0.96346 1.01062 1.01670 1.21567 0.95330 0.97565 1.01799 1.21565 0.94657 0.96093 1.01862 1.23175 0.95030 0.99907 0.98134 0.89611 1.23372 0.88089 0.95635 0.95469 1.89076 1.35138 1.18964 1.86604 1.24145 1.00830 0.83871 0.96475 1.21696 0.93091 0.93365 0.87422 0.90719 1.43980 1.25356 1.40288 1.21323 1.20721 0.88207 0.90335 0.98645 1.19240 0.93480 1.15983 1.10008 0.91362 1.24969 0.95114 0.99275 1.00323 1.70110 0.98537 1.49160 1.37188 0.86282 0.77318 0.79400 0.83575 1.21513 1.21769 1.20595 0.93214 0.92790 0.92998 0.92328 0.92072 0.91587 0.92452 0.93350 0.90445 0.88798 0.93826 0.95340 0.94318 0.97568 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.52 5.78 -26.73 -0.15 -1.67 16 3 C -0.10 -1.49 4.42 -26.73 -0.12 -1.61 16 4 C -0.14 -2.46 2.30 -89.05 -0.20 -2.66 16 5 H 0.09 1.66 7.21 -51.93 -0.37 1.29 16 6 C 0.05 0.83 6.32 37.93 0.24 1.07 16 7 O -0.38 -7.46 11.01 -35.23 -0.39 -7.85 16 8 C 0.03 0.50 6.78 37.93 0.26 0.76 16 9 C 0.15 3.20 3.24 -66.37 -0.22 2.98 16 10 H 0.07 1.52 7.51 -51.93 -0.39 1.13 16 11 N -0.59 -14.93 2.82 -171.69 -0.48 -15.41 16 12 C 0.17 4.25 7.94 59.85 0.48 4.72 16 13 C -0.26 -7.11 9.62 -15.06 -0.14 -7.25 16 14 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 15 C 0.00 0.04 5.06 -17.43 -0.09 -0.04 16 16 N -0.91 -26.78 10.67 55.49 0.59 -26.19 16 17 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.67 7.49 -51.93 -0.39 0.28 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 28 H 0.05 0.69 7.81 -51.93 -0.41 0.28 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 2.07 8.02 -51.93 -0.42 1.65 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.04 1.06 7.21 -51.93 -0.37 0.68 16 34 H 0.01 0.14 6.49 -51.93 -0.34 -0.20 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 277.12 15.07 4.18 4.18 Total: -1.00 -29.66 277.12 -6.71 -36.37 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.99 Total: -3.15 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 0.41 Total: -4.92 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.11 Total: -41.60 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.39 Total: -7.85 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.66 -6.71 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710980989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.102 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds