Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.52997 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.56622 * 309.89904 * 4 3 2 6 6 C 1.54475 * 110.51156 * 72.57816 * 4 3 2 7 7 O 1.44431 * 104.80391 * 142.62254 * 6 4 3 8 8 C 1.44643 * 105.36763 * 319.56502 * 7 6 4 9 9 C 1.54479 * 104.69604 * 40.34889 * 8 7 6 10 10 H 1.08991 * 110.51756 * 94.90258 * 9 8 7 11 11 N 1.46498 * 110.50845 * 217.47555 * 9 8 7 12 12 C 1.46505 * 119.99859 * 228.13184 * 11 9 8 13 13 C 1.36939 * 120.00118 * 48.13443 * 11 9 8 14 14 H 1.07993 * 120.00071 * 326.88701 * 13 11 9 15 15 C 1.38819 * 119.99742 * 146.88855 * 13 11 9 16 16 N 1.31624 * 119.99626 * 169.92833 * 15 13 11 17 17 Si 1.86797 * 120.00348 * 349.92600 * 15 13 11 18 18 H 1.48505 * 109.46806 * 85.92296 * 17 15 13 19 19 H 1.48494 * 109.47381 * 205.92248 * 17 15 13 20 20 H 1.48499 * 109.46996 * 325.92802 * 17 15 13 21 21 H 1.08997 * 109.46671 * 59.99751 * 1 2 3 22 22 H 1.09006 * 109.46963 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46656 * 299.99930 * 1 2 3 24 24 H 1.09005 * 109.46890 * 239.99622 * 2 1 3 25 25 H 1.09004 * 109.46843 * 120.00581 * 2 1 3 26 26 H 1.09002 * 109.46763 * 60.00142 * 3 2 1 27 27 H 1.08996 * 109.47034 * 300.00063 * 3 2 1 28 28 H 1.09000 * 110.37233 * 261.45010 * 6 4 3 29 29 H 1.08996 * 110.37318 * 23.79172 * 6 4 3 30 30 H 1.08997 * 110.34180 * 281.59397 * 8 7 6 31 31 H 1.09001 * 110.50675 * 159.18473 * 8 7 6 32 32 H 1.09001 * 109.47054 * 57.54606 * 12 11 9 33 33 H 1.08997 * 109.46991 * 297.53940 * 12 11 9 34 34 H 1.09005 * 109.46914 * 177.53902 * 12 11 9 35 35 H 0.97000 * 119.99918 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9526 0.7879 0.7838 6 6 4.1119 1.0090 -1.3795 7 8 5.2806 1.8306 -1.5918 8 6 4.9185 3.1446 -1.1074 9 6 4.1115 2.8781 0.1826 10 1 4.7596 2.9339 1.0571 11 7 3.0062 3.8321 0.3028 12 6 2.7830 4.5391 1.5663 13 6 2.1816 4.0628 -0.7659 14 1 2.5745 4.0176 -1.7708 15 6 0.8406 4.3550 -0.5575 16 7 0.0941 4.7699 -1.5590 17 14 0.0955 4.1594 1.1443 18 1 0.3209 5.4000 1.9288 19 1 -1.3631 3.9101 1.0204 20 1 0.7367 3.0127 1.8365 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 4.3871 -0.0456 -1.3650 29 1 3.3695 1.1977 -2.1549 30 1 4.3008 3.6620 -1.8414 31 1 5.8113 3.7281 -0.8827 32 1 3.6823 5.0925 1.8368 33 1 2.5505 3.8181 2.3500 34 1 1.9500 5.2329 1.4522 35 1 -0.8428 4.9744 -1.4133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710980990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -19.204796 kcal Electronic energy + Delta-G solvation = -15777.679855 eV Core-core repulsion = 13390.815485 eV Total energy + Delta-G solvation = -2386.864370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21831 -35.61360 -34.23688 -31.73895 -30.26414 -28.35694 -26.01340 -25.20810 -23.23387 -21.95903 -20.31087 -18.94136 -16.75510 -15.78402 -15.57323 -15.00564 -14.56484 -14.09165 -13.56976 -13.38247 -13.12542 -12.55972 -12.29897 -12.04451 -11.97594 -11.46483 -11.11161 -11.07857 -10.84976 -10.47806 -10.36108 -9.97771 -9.84360 -9.70934 -9.70109 -9.10187 -9.00489 -8.53378 -6.90257 -5.98230 -3.42390 3.25345 3.38999 3.44871 4.44944 4.56176 5.04891 5.26651 5.39788 5.45432 5.60048 5.65449 5.78956 5.91228 5.99879 6.03506 6.22042 6.26961 6.30815 6.38528 6.40622 6.44037 6.55536 6.59586 6.61750 6.66456 6.70517 6.86054 7.19371 7.41471 7.61743 7.97962 8.29986 8.91068 9.65624 10.02349 11.16683 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.016409 C = 0.012489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.050149 B = 1705.991268 C = 2241.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.131 4.131 5 H 0.061 0.939 6 C 0.056 3.944 7 O -0.392 6.392 8 C 0.032 3.968 9 C 0.151 3.849 10 H 0.064 0.936 11 N -0.602 5.602 12 C 0.095 3.905 13 C -0.258 4.258 14 H 0.088 0.912 15 C 0.029 3.971 16 N -0.911 5.911 17 Si 0.890 3.110 18 H -0.292 1.292 19 H -0.308 1.308 20 H -0.258 1.258 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -6.435 4.341 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.152 4.152 5 H 0.079 0.921 6 C -0.021 4.021 7 O -0.311 6.311 8 C -0.046 4.046 9 C 0.043 3.957 10 H 0.083 0.917 11 N -0.326 5.326 12 C -0.049 4.049 13 C -0.387 4.387 14 H 0.106 0.894 15 C -0.171 4.171 16 N -0.554 5.554 17 Si 0.723 3.277 18 H -0.221 1.221 19 H -0.236 1.236 20 H -0.184 1.184 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.392 -6.428 4.193 8.842 hybrid contribution -0.770 0.008 1.093 1.337 sum 3.621 -6.420 5.286 9.070 Atomic orbital electron populations 1.21739 0.96634 1.00181 1.02133 1.21647 0.95450 0.98995 1.00235 1.21962 0.92758 0.93889 1.06445 1.22900 0.97853 0.98049 0.96408 0.92074 1.23408 0.87672 0.94330 0.96701 1.89008 1.35793 1.21812 1.84463 1.23943 0.98759 0.84829 0.97096 1.21685 0.89470 0.88429 0.96159 0.91728 1.44060 1.33211 1.44524 1.10776 1.21565 0.99776 0.95429 0.88166 1.18725 0.88729 1.43720 0.87480 0.89444 1.25388 0.95838 0.99201 0.96636 1.69741 1.07377 1.47509 1.30754 0.87137 0.77054 0.78006 0.85482 1.22091 1.23640 1.18350 0.92342 0.93821 0.93364 0.93001 0.93624 0.90854 0.87977 0.90794 0.92171 0.90376 0.90546 0.96014 0.96501 0.91496 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 37.16 0.37 -2.13 16 2 C -0.13 -2.12 5.83 -26.73 -0.16 -2.28 16 3 C -0.11 -2.27 2.81 -26.73 -0.08 -2.35 16 4 C -0.13 -2.43 3.07 -89.05 -0.27 -2.70 16 5 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 6 C 0.06 1.00 6.63 37.93 0.25 1.25 16 7 O -0.39 -7.58 11.65 -35.23 -0.41 -7.99 16 8 C 0.03 0.61 7.22 37.93 0.27 0.88 16 9 C 0.15 2.97 3.65 -66.36 -0.24 2.72 16 10 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 11 N -0.60 -13.52 1.72 -171.69 -0.30 -13.82 16 12 C 0.10 2.01 8.36 59.85 0.50 2.51 16 13 C -0.26 -6.67 6.62 -15.06 -0.10 -6.77 16 14 H 0.09 2.46 6.29 -52.49 -0.33 2.13 16 15 C 0.03 0.78 4.88 -17.43 -0.08 0.69 16 16 N -0.91 -26.78 13.97 55.49 0.78 -26.01 16 17 Si 0.89 21.61 22.74 -169.99 -3.86 17.74 16 18 H -0.29 -6.99 6.44 56.52 0.36 -6.62 16 19 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 20 H -0.26 -5.94 4.69 56.52 0.27 -5.68 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.81 7.72 -51.93 -0.40 0.41 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.62 4.08 -51.93 -0.21 1.41 16 27 H 0.10 2.38 5.41 -51.93 -0.28 2.10 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 30 H 0.08 1.69 5.81 -51.93 -0.30 1.38 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.34 7.05 -51.93 -0.37 -0.03 16 34 H 0.07 1.53 3.92 -51.93 -0.20 1.33 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 256.70 15.07 3.87 3.87 Total: -1.00 -27.88 256.70 -5.07 -32.95 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.60 Total: 1.43 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 0.46 Total: -8.17 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.48 Total: -39.82 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.41 Total: -7.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -3.86 Total: 17.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.88 -5.07 -32.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710980990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.744 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds