Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 C 1.52997 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.56622 * 309.89904 * 4 3 2 6 6 C 1.54475 * 110.51156 * 72.57816 * 4 3 2 7 7 O 1.44431 * 104.80391 * 142.62254 * 6 4 3 8 8 C 1.44643 * 105.36763 * 319.56502 * 7 6 4 9 9 C 1.54479 * 104.69604 * 40.34889 * 8 7 6 10 10 H 1.08991 * 110.51756 * 94.90258 * 9 8 7 11 11 N 1.46498 * 110.50845 * 217.47555 * 9 8 7 12 12 C 1.46505 * 119.99859 * 228.13184 * 11 9 8 13 13 C 1.36939 * 120.00118 * 48.13443 * 11 9 8 14 14 H 1.07993 * 120.00071 * 326.88701 * 13 11 9 15 15 C 1.38819 * 119.99742 * 146.88855 * 13 11 9 16 16 N 1.31624 * 119.99626 * 169.92833 * 15 13 11 17 17 Si 1.86797 * 120.00348 * 349.92600 * 15 13 11 18 18 H 1.48505 * 109.46806 * 85.92296 * 17 15 13 19 19 H 1.48494 * 109.47381 * 205.92248 * 17 15 13 20 20 H 1.48499 * 109.46996 * 325.92802 * 17 15 13 21 21 H 1.08997 * 109.46671 * 59.99751 * 1 2 3 22 22 H 1.09006 * 109.46963 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46656 * 299.99930 * 1 2 3 24 24 H 1.09005 * 109.46890 * 239.99622 * 2 1 3 25 25 H 1.09004 * 109.46843 * 120.00581 * 2 1 3 26 26 H 1.09002 * 109.46763 * 60.00142 * 3 2 1 27 27 H 1.08996 * 109.47034 * 300.00063 * 3 2 1 28 28 H 1.09000 * 110.37233 * 261.45010 * 6 4 3 29 29 H 1.08996 * 110.37318 * 23.79172 * 6 4 3 30 30 H 1.08997 * 110.34180 * 281.59397 * 8 7 6 31 31 H 1.09001 * 110.50675 * 159.18473 * 8 7 6 32 32 H 1.09001 * 109.47054 * 57.54606 * 12 11 9 33 33 H 1.08997 * 109.46991 * 297.53940 * 12 11 9 34 34 H 1.09005 * 109.46914 * 177.53902 * 12 11 9 35 35 H 0.97000 * 119.99918 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9526 0.7879 0.7838 6 6 4.1119 1.0090 -1.3795 7 8 5.2806 1.8306 -1.5918 8 6 4.9185 3.1446 -1.1074 9 6 4.1115 2.8781 0.1826 10 1 4.7596 2.9339 1.0571 11 7 3.0062 3.8321 0.3028 12 6 2.7830 4.5391 1.5663 13 6 2.1816 4.0628 -0.7659 14 1 2.5745 4.0176 -1.7708 15 6 0.8406 4.3550 -0.5575 16 7 0.0941 4.7699 -1.5590 17 14 0.0955 4.1594 1.1443 18 1 0.3209 5.4000 1.9288 19 1 -1.3631 3.9101 1.0204 20 1 0.7367 3.0127 1.8365 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 4.3871 -0.0456 -1.3650 29 1 3.3695 1.1977 -2.1549 30 1 4.3008 3.6620 -1.8414 31 1 5.8113 3.7281 -0.8827 32 1 3.6823 5.0925 1.8368 33 1 2.5505 3.8181 2.3500 34 1 1.9500 5.2329 1.4522 35 1 -0.8428 4.9744 -1.4133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710980990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -37.516406 kcal Electronic energy + Delta-G solvation = -15778.473906 eV Core-core repulsion = 13390.815485 eV Total energy + Delta-G solvation = -2387.658421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78326 -37.31732 -35.74480 -33.71818 -31.80013 -29.91219 -27.90424 -26.69723 -24.96799 -23.48570 -21.86291 -20.55832 -18.66235 -17.52193 -17.17608 -16.61232 -16.17591 -15.70694 -15.17184 -14.99632 -14.72677 -14.25652 -14.12512 -13.59862 -13.49364 -13.17835 -12.70270 -12.63077 -12.37294 -12.18789 -11.99959 -11.68822 -11.59612 -11.34036 -11.18701 -10.82167 -10.62022 -10.45607 -8.77215 -8.09102 -5.49033 1.30499 1.41225 1.50170 2.44101 2.99037 3.20269 3.48822 3.88963 4.00473 4.12044 4.27865 4.42718 4.44637 4.47635 4.51906 4.57941 4.78553 4.89209 4.91824 4.94530 4.96734 5.03184 5.05287 5.12657 5.17360 5.30189 5.42519 5.62297 5.87639 5.94722 6.00216 6.21098 6.99019 7.66163 8.03240 9.09891 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.016409 C = 0.012489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.050149 B = 1705.991268 C = 2241.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.128 4.128 5 H 0.090 0.910 6 C 0.057 3.943 7 O -0.396 6.396 8 C 0.035 3.965 9 C 0.143 3.857 10 H 0.093 0.907 11 N -0.612 5.612 12 C 0.091 3.909 13 C -0.224 4.224 14 H 0.053 0.947 15 C -0.025 4.025 16 N -0.964 5.964 17 Si 0.941 3.059 18 H -0.285 1.285 19 H -0.326 1.326 20 H -0.234 1.234 21 H 0.035 0.965 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -8.176 6.503 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.149 4.149 5 H 0.109 0.891 6 C -0.020 4.020 7 O -0.315 6.315 8 C -0.043 4.043 9 C 0.036 3.964 10 H 0.112 0.888 11 N -0.336 5.336 12 C -0.052 4.052 13 C -0.354 4.354 14 H 0.070 0.930 15 C -0.219 4.219 16 N -0.610 5.610 17 Si 0.773 3.227 18 H -0.213 1.213 19 H -0.256 1.256 20 H -0.159 1.159 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.065 -8.185 6.386 12.024 hybrid contribution -1.165 0.538 0.353 1.331 sum 4.900 -7.647 6.740 11.310 Atomic orbital electron populations 1.21750 0.96829 1.01650 1.00552 1.21611 0.95302 0.96980 1.01974 1.21750 0.93928 0.95504 1.03224 1.22902 0.96670 0.97800 0.97505 0.89129 1.23472 0.86904 0.95853 0.95752 1.89009 1.36142 1.21711 1.84611 1.23856 0.99225 0.85048 0.96127 1.21943 0.88772 0.88453 0.97225 0.88847 1.44143 1.33270 1.45802 1.10363 1.21627 1.00401 0.95613 0.87598 1.18481 0.88826 1.40809 0.87293 0.92962 1.25895 0.96356 1.00083 0.99553 1.69886 1.07421 1.50665 1.33055 0.86311 0.75226 0.78937 0.82221 1.21261 1.25628 1.15880 0.94615 0.90826 0.94301 0.91730 0.91213 0.92776 0.92251 0.87486 0.94400 0.93796 0.88263 0.93073 0.94788 0.93606 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.91 71.98 0.71 -4.06 16 2 C -0.12 -3.75 5.83 30.60 0.18 -3.57 16 3 C -0.11 -4.10 2.81 30.59 0.09 -4.01 16 4 C -0.13 -4.35 3.07 -9.78 -0.03 -4.38 16 5 H 0.09 2.61 8.13 -2.39 -0.02 2.59 16 6 C 0.06 1.90 6.63 72.48 0.48 2.38 16 7 O -0.40 -14.46 11.65 -148.98 -1.74 -16.20 16 8 C 0.04 1.31 7.22 72.48 0.52 1.84 16 9 C 0.14 5.24 3.65 46.01 0.17 5.40 16 10 H 0.09 2.93 7.98 -2.39 -0.02 2.91 16 11 N -0.61 -26.59 1.72 -697.09 -1.20 -27.79 16 12 C 0.09 3.60 8.36 127.77 1.07 4.67 16 13 C -0.22 -11.83 6.62 84.03 0.56 -11.27 16 14 H 0.05 3.11 6.29 -2.91 -0.02 3.09 16 15 C -0.02 -1.37 4.88 84.86 0.41 -0.96 16 16 N -0.96 -59.29 13.97 21.65 0.30 -58.99 16 17 Si 0.94 44.94 22.74 68.60 1.56 46.50 16 18 H -0.28 -13.09 6.44 99.48 0.64 -12.45 16 19 H -0.33 -16.43 7.11 99.48 0.71 -15.72 16 20 H -0.23 -10.18 4.69 99.48 0.47 -9.72 16 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.84 7.72 -2.38 -0.02 1.82 16 25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.05 2.27 4.08 -2.39 -0.01 2.26 16 27 H 0.06 2.81 5.41 -2.39 -0.01 2.79 16 28 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.04 1.43 7.71 -2.39 -0.02 1.41 16 30 H 0.04 1.94 5.81 -2.39 -0.01 1.92 16 31 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.23 7.05 -2.39 -0.02 1.22 16 34 H 0.05 2.01 3.92 -2.38 -0.01 2.00 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -61.63 256.70 3.83 -57.80 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.75 Total: 12.65 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.16 Total: -13.97 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.90 Total: -86.78 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.74 Total: -16.20 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.56 Total: 46.50 kcal Total: -61.63 3.83 -57.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710980990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.282 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds