Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46764 * 120.00140 * 2 1 3 5 5 H 1.08994 * 110.56443 * 296.00678 * 4 2 1 6 6 C 1.54481 * 110.51380 * 58.69034 * 4 2 1 7 7 O 1.44418 * 104.80245 * 142.62186 * 6 4 2 8 8 C 1.44423 * 105.27794 * 319.48464 * 7 6 4 9 9 C 1.54479 * 104.79990 * 40.51730 * 8 7 6 10 10 H 1.08997 * 110.63404 * 94.72097 * 9 8 7 11 11 N 1.46906 * 110.51058 * 217.37429 * 9 8 7 12 12 C 1.46896 * 111.00258 * 269.64099 * 11 9 8 13 13 C 1.50700 * 109.47221 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99803 * 180.27773 * 13 12 11 16 16 N 1.31517 * 119.99767 * 359.72269 * 15 13 12 17 17 Si 1.86797 * 119.99979 * 179.72857 * 15 13 12 18 18 H 1.48509 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47677 * 119.99562 * 17 15 13 20 20 H 1.48500 * 109.46961 * 239.99787 * 17 15 13 21 21 H 1.09004 * 109.47287 * 60.00123 * 1 2 3 22 22 H 1.09002 * 109.47558 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47142 * 300.00753 * 1 2 3 24 24 H 1.08998 * 109.46708 * 239.99852 * 2 1 3 25 25 H 1.09002 * 109.46578 * 186.10696 * 3 2 1 26 26 H 1.08995 * 109.47361 * 306.09770 * 3 2 1 27 27 H 1.08993 * 109.47261 * 66.10635 * 3 2 1 28 28 H 1.08998 * 110.37220 * 261.45735 * 6 4 2 29 29 H 1.09003 * 110.37188 * 23.78775 * 6 4 2 30 30 H 1.08997 * 110.37765 * 281.68445 * 8 7 6 31 31 H 1.09007 * 110.37065 * 159.34208 * 8 7 6 32 32 H 1.00903 * 110.99728 * 33.59723 * 11 9 8 33 33 H 1.09007 * 109.46963 * 59.99781 * 12 11 9 34 34 H 1.08995 * 109.46923 * 300.00215 * 12 11 9 35 35 H 0.96998 * 119.99303 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7456 -0.1821 2.1496 6 6 1.5114 -2.1723 1.2902 7 8 2.6048 -2.9482 1.8270 8 6 3.7931 -2.4119 1.2056 9 6 3.5755 -0.8825 1.1924 10 1 4.0405 -0.4209 2.0635 11 7 4.1091 -0.2974 -0.0449 12 6 5.5137 0.0984 0.1228 13 6 6.0254 0.6924 -1.1642 14 1 5.3726 0.7680 -2.0211 15 6 7.3289 1.1337 -1.2494 16 7 8.1240 1.0412 -0.2059 17 14 7.9654 1.8631 -2.8470 18 1 6.8813 1.8540 -3.8619 19 1 8.4110 3.2597 -2.6108 20 1 9.1100 1.0548 -3.3387 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 3.1245 1.4443 -0.1093 26 1 1.5903 1.9868 -0.8303 27 1 1.7687 1.9237 0.9395 28 1 0.6411 -2.2409 1.9428 29 1 1.2612 -2.5135 0.2856 30 1 3.8929 -2.7897 0.1881 31 1 4.6757 -2.6645 1.7935 32 1 4.0028 -0.9336 -0.8209 33 1 6.1096 -0.7772 0.3807 34 1 5.5901 0.8375 0.9203 35 1 9.0409 1.3520 -0.2659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711000407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = -54.825312 kcal Electronic energy + Delta-G solvation = -14995.874878 eV Core-core repulsion = 12607.465886 eV Total energy + Delta-G solvation = -2388.408992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66377 -35.61785 -34.43704 -32.36733 -29.34219 -28.12250 -26.61709 -25.62786 -22.64802 -21.78836 -21.32339 -18.78042 -16.77627 -15.96242 -15.51212 -15.29254 -14.65384 -13.95827 -13.63299 -13.33165 -13.06121 -12.89610 -12.21956 -12.07813 -11.77893 -11.58380 -11.40123 -10.94617 -10.84112 -10.72337 -10.60944 -10.15888 -10.15366 -9.95071 -9.90997 -9.54020 -9.18893 -8.51847 -7.24423 -6.07594 -4.09828 3.28340 3.36129 3.40486 4.21591 4.40479 4.92165 5.02157 5.14392 5.27693 5.31422 5.45575 5.47938 5.60667 5.66142 5.70696 5.95752 6.02659 6.05889 6.13275 6.21840 6.29766 6.39906 6.50109 6.64977 6.88352 7.00643 7.20594 7.34603 7.46701 7.73545 8.07061 8.27826 8.51979 8.99627 9.55630 11.03377 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.008082 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.509358 B = 3463.691379 C = 3970.850976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.109 4.109 5 H 0.076 0.924 6 C 0.047 3.953 7 O -0.383 6.383 8 C 0.019 3.981 9 C 0.060 3.940 10 H 0.084 0.916 11 N -0.666 5.666 12 C 0.190 3.810 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.330 0.670 33 H -0.013 1.013 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 -3.592 1.479 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.211 4.211 4 C -0.128 4.128 5 H 0.094 0.906 6 C -0.029 4.029 7 O -0.302 6.302 8 C -0.060 4.060 9 C -0.052 4.052 10 H 0.102 0.898 11 N -0.296 5.296 12 C 0.064 3.936 13 C -0.553 4.553 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.005 0.995 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.913 -3.094 1.825 12.442 hybrid contribution 0.923 -0.300 -0.873 1.305 sum -10.990 -3.394 0.952 11.541 Atomic orbital electron populations 1.21989 0.97029 1.00712 1.01245 1.20727 0.92819 0.97695 0.96825 1.22113 1.06584 0.93549 0.98856 1.22625 0.95424 0.95376 0.99417 0.90600 1.23522 0.90515 0.90416 0.98483 1.89058 1.16255 1.58145 1.66699 1.24296 0.88668 0.95025 0.97983 1.22911 0.94479 0.91861 0.95985 0.89751 1.60912 1.22877 1.43044 1.02794 1.19642 0.81279 0.94846 0.97833 1.21197 0.96093 1.40197 0.97819 0.91849 1.24986 0.96861 0.96030 0.96648 1.69970 1.06766 1.47448 1.29402 0.86448 0.78753 0.78768 0.83473 1.19651 1.21010 1.21138 0.93059 0.93462 0.93271 0.91070 0.86906 0.94681 0.94999 0.89878 0.92541 0.92404 0.89441 0.85204 0.99490 0.95279 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.94 37.16 0.33 -1.47 16 2 C -0.06 -0.88 1.90 -90.62 -0.17 -1.06 16 3 C -0.15 -2.48 8.83 37.16 0.33 -2.15 16 4 C -0.11 -1.59 2.68 -89.05 -0.24 -1.83 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 6 C 0.05 0.65 6.09 37.93 0.23 0.88 16 7 O -0.38 -6.27 11.65 -35.23 -0.41 -6.68 16 8 C 0.02 0.31 7.31 37.93 0.28 0.59 16 9 C 0.06 1.02 3.26 -66.14 -0.22 0.80 16 10 H 0.08 1.55 7.82 -51.93 -0.41 1.14 16 11 N -0.67 -12.99 2.31 -106.33 -0.25 -13.24 16 12 C 0.19 4.70 5.28 -4.98 -0.03 4.67 16 13 C -0.51 -13.95 9.32 -34.44 -0.32 -14.27 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.50 7.02 -51.93 -0.36 0.14 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.08 7.22 -51.93 -0.38 0.71 16 25 H 0.11 2.20 5.60 -51.93 -0.29 1.91 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.73 7.55 -51.93 -0.39 0.34 16 30 H 0.06 0.93 7.55 -51.93 -0.39 0.54 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.33 6.28 7.57 -39.29 -0.30 5.98 16 33 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 34 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -28.14 276.85 -6.54 -34.67 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.86 Total: 2.68 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 0.10 Total: -12.36 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.49 Total: -38.76 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.41 Total: -6.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.14 -6.54 -34.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711000407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.153 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds