Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46764 * 120.00140 * 2 1 3 5 5 H 1.08994 * 110.56443 * 296.00678 * 4 2 1 6 6 C 1.54481 * 110.51380 * 58.69034 * 4 2 1 7 7 O 1.44418 * 104.80245 * 142.62186 * 6 4 2 8 8 C 1.44423 * 105.27794 * 319.48464 * 7 6 4 9 9 C 1.54479 * 104.79990 * 40.51730 * 8 7 6 10 10 H 1.08997 * 110.63404 * 94.72097 * 9 8 7 11 11 N 1.46906 * 110.51058 * 217.37429 * 9 8 7 12 12 C 1.46896 * 111.00258 * 269.64099 * 11 9 8 13 13 C 1.50700 * 109.47221 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99803 * 180.27773 * 13 12 11 16 16 N 1.31517 * 119.99767 * 359.72269 * 15 13 12 17 17 Si 1.86797 * 119.99979 * 179.72857 * 15 13 12 18 18 H 1.48509 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47677 * 119.99562 * 17 15 13 20 20 H 1.48500 * 109.46961 * 239.99787 * 17 15 13 21 21 H 1.09004 * 109.47287 * 60.00123 * 1 2 3 22 22 H 1.09002 * 109.47558 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47142 * 300.00753 * 1 2 3 24 24 H 1.08998 * 109.46708 * 239.99852 * 2 1 3 25 25 H 1.09002 * 109.46578 * 186.10696 * 3 2 1 26 26 H 1.08995 * 109.47361 * 306.09770 * 3 2 1 27 27 H 1.08993 * 109.47261 * 66.10635 * 3 2 1 28 28 H 1.08998 * 110.37220 * 261.45735 * 6 4 2 29 29 H 1.09003 * 110.37188 * 23.78775 * 6 4 2 30 30 H 1.08997 * 110.37765 * 281.68445 * 8 7 6 31 31 H 1.09007 * 110.37065 * 159.34208 * 8 7 6 32 32 H 1.00903 * 110.99728 * 33.59723 * 11 9 8 33 33 H 1.09007 * 109.46963 * 59.99781 * 12 11 9 34 34 H 1.08995 * 109.46923 * 300.00215 * 12 11 9 35 35 H 0.96998 * 119.99303 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7456 -0.1821 2.1496 6 6 1.5114 -2.1723 1.2902 7 8 2.6048 -2.9482 1.8270 8 6 3.7931 -2.4119 1.2056 9 6 3.5755 -0.8825 1.1924 10 1 4.0405 -0.4209 2.0635 11 7 4.1091 -0.2974 -0.0449 12 6 5.5137 0.0984 0.1228 13 6 6.0254 0.6924 -1.1642 14 1 5.3726 0.7680 -2.0211 15 6 7.3289 1.1337 -1.2494 16 7 8.1240 1.0412 -0.2059 17 14 7.9654 1.8631 -2.8470 18 1 6.8813 1.8540 -3.8619 19 1 8.4110 3.2597 -2.6108 20 1 9.1100 1.0548 -3.3387 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 3.1245 1.4443 -0.1093 26 1 1.5903 1.9868 -0.8303 27 1 1.7687 1.9237 0.9395 28 1 0.6411 -2.2409 1.9428 29 1 1.2612 -2.5135 0.2856 30 1 3.8929 -2.7897 0.1881 31 1 4.6757 -2.6645 1.7935 32 1 4.0028 -0.9336 -0.8209 33 1 6.1096 -0.7772 0.3807 34 1 5.5901 0.8375 0.9203 35 1 9.0409 1.3520 -0.2659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711000407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = -72.145651 kcal Electronic energy + Delta-G solvation = -14996.625944 eV Core-core repulsion = 12607.465886 eV Total energy + Delta-G solvation = -2389.160058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96276 -37.00864 -35.99527 -34.31879 -30.82734 -29.52213 -27.74783 -27.46015 -24.03420 -23.59284 -22.62918 -20.06961 -18.63044 -17.48124 -16.89195 -16.72347 -16.40569 -15.39111 -15.07484 -14.81769 -14.42318 -14.30230 -13.86640 -13.31568 -13.29890 -13.14113 -12.84375 -12.72488 -12.45339 -12.09718 -12.06613 -11.93096 -11.50324 -11.31175 -11.17973 -11.09751 -10.78727 -10.63882 -8.91156 -8.21219 -6.31241 1.41472 1.42586 1.55582 2.40413 2.96416 3.13105 3.58277 3.80326 3.81461 3.94832 4.15028 4.32503 4.42927 4.53686 4.60823 4.75794 4.81541 4.91703 4.95689 5.00700 5.12049 5.14830 5.25708 5.29380 5.35775 5.47078 5.63559 5.70603 5.80380 6.01706 6.09593 6.43807 6.71611 6.90727 7.39671 8.90371 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.008082 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.509358 B = 3463.691379 C = 3970.850976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.151 4.151 4 C -0.101 4.101 5 H 0.081 0.919 6 C 0.049 3.951 7 O -0.394 6.394 8 C 0.025 3.975 9 C 0.054 3.946 10 H 0.065 0.935 11 N -0.652 5.652 12 C 0.208 3.792 13 C -0.528 4.528 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.280 1.280 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.335 0.665 33 H -0.038 1.038 34 H -0.001 1.001 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 -3.830 0.507 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.208 4.208 4 C -0.121 4.121 5 H 0.100 0.900 6 C -0.028 4.028 7 O -0.313 6.313 8 C -0.054 4.054 9 C -0.057 4.057 10 H 0.083 0.917 11 N -0.282 5.282 12 C 0.081 3.919 13 C -0.566 4.566 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.206 1.206 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.154 0.846 33 H -0.020 1.020 34 H 0.017 0.983 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.672 -3.342 0.853 14.101 hybrid contribution 1.420 -0.228 -0.517 1.528 sum -12.253 -3.570 0.336 12.767 Atomic orbital electron populations 1.21914 0.94451 1.02050 1.01905 1.20676 0.94901 0.96042 0.96109 1.22014 1.04208 0.95275 0.99337 1.22584 0.92874 0.96621 0.99979 0.90024 1.23703 0.90339 0.88857 0.99855 1.89052 1.16637 1.58570 1.67019 1.24144 0.88942 0.94164 0.98148 1.22961 0.96457 0.92321 0.93990 0.91651 1.60836 1.19467 1.43833 1.04105 1.19238 0.83742 0.92903 0.96041 1.21553 0.96435 1.40031 0.98568 0.91513 1.25904 0.97205 0.96438 1.00144 1.70097 1.07186 1.48560 1.31658 0.85342 0.78256 0.77788 0.79260 1.18533 1.20697 1.20610 0.92535 0.91783 0.92560 0.91904 0.90477 0.94037 0.94612 0.87246 0.91282 0.91969 0.90120 0.84636 1.02029 0.98315 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.94 71.98 0.64 -2.32 16 2 C -0.06 -1.55 1.90 -10.79 -0.02 -1.57 16 3 C -0.15 -4.73 8.83 71.98 0.64 -4.10 16 4 C -0.10 -2.78 2.68 -9.78 -0.03 -2.81 16 5 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 6 C 0.05 1.19 6.09 72.49 0.44 1.63 16 7 O -0.39 -12.19 11.65 -148.98 -1.74 -13.93 16 8 C 0.02 0.80 7.31 72.48 0.53 1.33 16 9 C 0.05 1.87 3.26 45.93 0.15 2.01 16 10 H 0.07 2.49 7.82 -2.39 -0.02 2.47 16 11 N -0.65 -25.86 2.31 -490.33 -1.13 -26.99 16 12 C 0.21 10.68 5.28 85.56 0.45 11.13 16 13 C -0.53 -29.02 9.32 25.60 0.24 -28.78 16 14 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 17 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 22 H 0.06 1.10 7.02 -2.39 -0.02 1.09 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.79 7.22 -2.39 -0.02 1.77 16 25 H 0.08 3.02 5.60 -2.39 -0.01 3.01 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.07 1.54 7.55 -2.39 -0.02 1.53 16 30 H 0.06 1.96 7.55 -2.39 -0.02 1.94 16 31 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.33 12.73 7.57 -89.69 -0.68 12.05 16 33 H -0.04 -2.11 8.14 -2.38 -0.02 -2.13 16 34 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -60.44 276.85 3.32 -57.12 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.37 Total: 16.55 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.51 Total: -22.95 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -0.85 Total: -82.56 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.74 Total: -13.93 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.44 3.32 -57.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711000407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.023 kcal (2) G-P(sol) polarization free energy of solvation -60.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds