Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.52998 * 109.46615 * 120.00153 * 2 1 3 5 5 H 1.08988 * 110.46393 * 51.35988 * 4 2 1 6 6 C 1.54486 * 110.51032 * 288.60076 * 4 2 1 7 7 O 1.44425 * 104.80395 * 217.38352 * 6 4 2 8 8 C 1.44644 * 105.36804 * 40.43551 * 7 6 4 9 9 C 1.54478 * 104.70049 * 319.65142 * 8 7 6 10 10 H 1.08998 * 110.51621 * 265.10436 * 9 8 7 11 11 N 1.46894 * 110.51217 * 142.52274 * 9 8 7 12 12 C 1.46905 * 110.99879 * 77.28528 * 11 9 8 13 13 C 1.50702 * 109.47214 * 180.02562 * 12 11 9 14 14 H 1.07993 * 119.99825 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99811 * 179.72541 * 13 12 11 16 16 N 1.31514 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99913 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47279 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47127 * 119.99976 * 17 15 13 20 20 H 1.48496 * 109.47129 * 240.00036 * 17 15 13 21 21 H 1.08996 * 109.47066 * 305.00061 * 1 2 3 22 22 H 1.09003 * 109.46578 * 65.00087 * 1 2 3 23 23 H 1.09004 * 109.47024 * 184.99950 * 1 2 3 24 24 H 1.09003 * 109.47112 * 239.99833 * 2 1 3 25 25 H 1.08994 * 109.46988 * 171.46062 * 3 2 1 26 26 H 1.09000 * 109.47075 * 291.46096 * 3 2 1 27 27 H 1.09003 * 109.47009 * 51.46140 * 3 2 1 28 28 H 1.08994 * 110.37210 * 336.21516 * 6 4 2 29 29 H 1.08998 * 110.36747 * 98.43907 * 6 4 2 30 30 H 1.09005 * 110.50550 * 200.81435 * 8 7 6 31 31 H 1.08993 * 110.33975 * 78.41167 * 8 7 6 32 32 H 1.00903 * 111.00150 * 201.23486 * 11 9 8 33 33 H 1.09003 * 109.46904 * 59.99896 * 12 11 9 34 34 H 1.09001 * 109.46635 * 300.00160 * 12 11 9 35 35 H 0.97007 * 119.99762 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5658 -1.6979 1.3456 6 6 1.7852 0.1342 2.5101 7 8 2.9451 -0.0817 3.3431 8 6 4.0723 -0.0867 2.4368 9 6 3.5773 -0.8684 1.1998 10 1 3.8630 -1.9178 1.2716 11 7 4.1118 -0.2740 -0.0326 12 6 5.5171 -0.6524 -0.2331 13 6 6.0299 -0.0249 -1.5037 14 1 5.3771 0.5927 -2.1026 15 6 7.3340 -0.2353 -1.8989 16 7 8.1301 -0.9839 -1.1672 17 14 7.9695 0.5418 -3.4742 18 1 6.8836 1.3303 -4.1103 19 1 9.1120 1.4365 -3.1588 20 1 8.4178 -0.5239 -4.4060 21 1 -0.3633 0.5894 0.8418 22 1 -0.3632 0.4343 -0.9314 23 1 -0.3633 -1.0238 0.0896 24 1 1.8934 -0.5139 -0.8900 25 1 3.1192 1.4463 0.1526 26 1 1.8066 1.9104 -0.9564 27 1 1.5574 1.9985 0.8039 28 1 1.7005 1.1876 2.2432 29 1 0.8820 -0.2011 3.0199 30 1 4.9244 -0.5935 2.8899 31 1 4.3399 0.9328 2.1593 32 1 3.5508 -0.5309 -0.8309 33 1 5.5943 -1.7372 -0.3062 34 1 6.1116 -0.3018 0.6106 35 1 9.0477 -1.1316 -1.4451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711000409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -47.000179 kcal Electronic energy + Delta-G solvation = -15060.626410 eV Core-core repulsion = 12672.556741 eV Total energy + Delta-G solvation = -2388.069668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79132 -35.68011 -34.39010 -32.32904 -29.26256 -27.85474 -26.89620 -25.73957 -23.59445 -21.81860 -20.54609 -18.52287 -16.62304 -16.13354 -15.52659 -15.12266 -14.92701 -14.45271 -13.69409 -13.42981 -13.16047 -12.52841 -12.33168 -12.11902 -11.57183 -11.46101 -11.35432 -11.11567 -10.86315 -10.76922 -10.66439 -10.32734 -10.22597 -10.06752 -9.83165 -9.28991 -9.16420 -8.50741 -7.30081 -6.06428 -4.08575 3.28847 3.36449 3.40913 4.29781 4.41832 4.84035 4.93273 5.10281 5.23647 5.30039 5.39533 5.47427 5.55704 5.74671 5.77111 5.89286 5.96408 6.03419 6.14440 6.19269 6.28713 6.34734 6.44430 6.50797 6.61227 7.00693 7.11945 7.28940 7.41412 7.75235 8.08731 8.31019 8.54061 9.00915 9.56715 11.04674 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.008009 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.445209 B = 3495.056135 C = 3956.954786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.166 4.166 4 C -0.117 4.117 5 H 0.074 0.926 6 C 0.048 3.952 7 O -0.386 6.386 8 C 0.057 3.943 9 C 0.056 3.944 10 H 0.044 0.956 11 N -0.672 5.672 12 C 0.188 3.812 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.335 0.665 33 H -0.013 1.013 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 1.508 3.684 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 C -0.223 4.223 4 C -0.136 4.136 5 H 0.092 0.908 6 C -0.029 4.029 7 O -0.305 6.305 8 C -0.020 4.020 9 C -0.055 4.055 10 H 0.062 0.938 11 N -0.307 5.307 12 C 0.062 3.938 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.129 0.871 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.004 0.996 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.162 2.003 4.220 13.028 hybrid contribution 0.398 -0.680 -1.343 1.557 sum -11.764 1.323 2.876 12.183 Atomic orbital electron populations 1.21912 0.96146 1.01049 1.01414 1.20933 0.94142 0.97646 0.97020 1.22349 1.06125 0.93896 0.99897 1.22679 0.95849 0.99102 0.95925 0.90802 1.23570 0.89257 0.99787 0.90278 1.89072 1.16321 1.93898 1.31178 1.23522 0.88866 1.00895 0.88725 1.22794 0.92662 0.96665 0.93403 0.93835 1.61051 1.05947 1.60772 1.02883 1.19654 0.82907 0.93875 0.97406 1.21196 0.96543 1.30382 1.07107 0.91880 1.24990 0.96882 0.95355 0.97342 1.69973 1.06656 1.38598 1.38394 0.86442 0.78854 0.79013 0.83099 1.19656 1.20998 1.21134 0.93030 0.92869 0.93260 0.90847 0.87119 0.93795 0.94087 0.91246 0.90297 0.89684 0.90951 0.84414 0.99565 0.95279 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.01 37.16 0.33 -1.30 16 2 C -0.08 -1.06 2.22 -90.62 -0.20 -1.26 16 3 C -0.17 -2.40 8.04 37.16 0.30 -2.10 16 4 C -0.12 -1.68 2.92 -89.04 -0.26 -1.94 16 5 H 0.07 1.00 8.14 -51.94 -0.42 0.58 16 6 C 0.05 0.67 6.46 37.94 0.25 0.92 16 7 O -0.39 -6.56 11.65 -35.23 -0.41 -6.97 16 8 C 0.06 1.00 6.83 37.93 0.26 1.26 16 9 C 0.06 0.99 3.12 -66.14 -0.21 0.78 16 10 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 11 N -0.67 -13.49 3.28 -106.33 -0.35 -13.84 16 12 C 0.19 4.75 5.28 -4.97 -0.03 4.73 16 13 C -0.51 -14.15 9.32 -34.44 -0.32 -14.48 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H 0.05 0.53 7.80 -51.93 -0.40 0.13 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 25 H 0.11 1.92 5.50 -51.93 -0.29 1.64 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.54 6.21 -51.93 -0.32 0.22 16 28 H 0.07 0.95 5.30 -51.93 -0.28 0.68 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 32 H 0.34 6.49 6.04 -39.29 -0.24 6.26 16 33 H -0.01 -0.37 8.11 -51.93 -0.42 -0.79 16 34 H 0.03 0.79 7.76 -51.93 -0.40 0.39 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -28.72 271.84 -6.52 -35.23 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.59 Total: 2.75 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 0.03 Total: -11.91 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.39 Total: -39.62 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.41 Total: -6.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.72 -6.52 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711000409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.769 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds