Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 C 1.52994 * 109.46991 * 120.00146 * 2 1 3 5 5 H 1.09003 * 110.45844 * 297.39496 * 4 2 1 6 6 C 1.54480 * 110.62806 * 174.70900 * 4 2 1 7 7 O 1.44422 * 104.80471 * 265.27537 * 6 4 2 8 8 C 1.44428 * 105.27650 * 319.49010 * 7 6 4 9 9 C 1.54478 * 104.80451 * 40.50881 * 8 7 6 10 10 H 1.08999 * 110.62849 * 94.72196 * 9 8 7 11 11 N 1.46902 * 110.51231 * 217.38300 * 9 8 7 12 12 C 1.46906 * 110.99573 * 269.64055 * 11 9 8 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99734 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47157 * 120.00251 * 17 15 13 20 20 H 1.48502 * 109.47214 * 239.99759 * 17 15 13 21 21 H 1.09002 * 109.46982 * 300.00192 * 1 2 3 22 22 H 1.09006 * 109.46963 * 59.99519 * 1 2 3 23 23 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46713 * 240.00262 * 2 1 3 25 25 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47038 * 299.99602 * 3 2 1 27 27 H 1.09002 * 109.47436 * 60.00085 * 3 2 1 28 28 H 1.09003 * 110.37053 * 24.10578 * 6 4 2 29 29 H 1.09003 * 110.37138 * 146.44353 * 6 4 2 30 30 H 1.09001 * 110.36986 * 281.67881 * 8 7 6 31 31 H 1.08995 * 110.37683 * 159.34412 * 8 7 6 32 32 H 1.00896 * 111.00219 * 33.59695 * 11 9 8 33 33 H 1.09002 * 109.46991 * 299.99841 * 12 11 9 34 34 H 1.09000 * 109.47202 * 60.00133 * 12 11 9 35 35 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5787 -0.8534 1.2113 7 8 3.8231 -2.1605 0.6479 8 6 2.8331 -3.0245 1.2474 9 6 1.5383 -2.1825 1.2735 10 1 0.9269 -2.3909 0.3955 11 7 0.7781 -2.4452 2.5027 12 6 -0.1727 -3.5481 2.3081 13 6 -0.9328 -3.7876 3.5871 14 1 -0.7302 -3.1809 4.4573 15 6 -1.8869 -4.7813 3.6462 16 7 -2.1339 -5.5197 2.5864 17 14 -2.8286 -5.0786 5.2318 18 1 -2.3666 -4.1214 6.2689 19 1 -4.2807 -4.8836 4.9891 20 1 -2.5869 -6.4677 5.6981 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 4.0104 -0.0797 0.5764 29 1 3.9897 -0.7916 2.2190 30 1 3.1299 -3.2957 2.2606 31 1 2.6922 -3.9186 0.6403 32 1 1.3967 -2.6335 3.2772 33 1 -0.8721 -3.2889 1.5133 34 1 0.3708 -4.4521 2.0333 35 1 -2.8053 -6.2185 2.6278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711000411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -63.750070 kcal Electronic energy + Delta-G solvation = -14791.752046 eV Core-core repulsion = 12402.956048 eV Total energy + Delta-G solvation = -2388.795998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.63672 -35.41375 -34.78268 -32.41341 -29.28660 -28.33623 -26.82757 -25.62460 -22.80662 -21.94216 -20.69551 -19.45247 -16.69073 -15.91850 -15.67206 -15.16257 -14.63287 -14.10257 -13.90447 -13.49280 -13.15208 -12.50972 -12.31615 -12.00718 -11.88831 -11.57452 -11.45794 -11.28306 -11.05606 -10.88196 -10.67439 -10.36811 -10.29843 -10.11800 -9.86882 -9.48237 -9.17904 -8.51992 -7.33745 -6.06437 -4.08609 3.29030 3.36494 3.41297 4.22288 4.41233 4.82306 4.89043 5.08393 5.24192 5.29514 5.40753 5.46611 5.54888 5.60033 5.67499 5.84250 5.88885 5.98709 6.04875 6.08846 6.12441 6.19257 6.36957 6.39660 6.61453 6.69573 7.02026 7.23096 7.37001 7.75345 8.08603 8.32054 8.55369 9.00758 9.56677 11.04627 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.007112 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.578953 B = 3936.256642 C = 4254.670223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.110 4.110 5 H 0.093 0.907 6 C 0.044 3.956 7 O -0.381 6.381 8 C 0.016 3.984 9 C 0.062 3.938 10 H 0.087 0.913 11 N -0.676 5.676 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.329 0.671 33 H 0.028 0.972 34 H -0.013 1.013 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.320 9.751 -3.894 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.204 4.204 4 C -0.130 4.130 5 H 0.111 0.889 6 C -0.033 4.033 7 O -0.299 6.299 8 C -0.062 4.062 9 C -0.050 4.050 10 H 0.106 0.894 11 N -0.306 5.306 12 C 0.067 3.933 13 C -0.553 4.553 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.046 0.954 34 H 0.005 0.995 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.887 10.027 -4.231 13.441 hybrid contribution -0.169 -1.073 0.945 1.440 sum 7.717 8.955 -3.286 12.269 Atomic orbital electron populations 1.21819 0.94571 1.02671 1.01057 1.21045 0.96308 0.95363 0.97481 1.21897 1.00543 0.96373 1.01621 1.22626 0.94140 0.96845 0.99341 0.88910 1.23554 0.95520 0.85960 0.98226 1.89057 1.54922 1.19482 1.66487 1.24330 0.88846 0.94810 0.98238 1.23002 0.93132 0.92757 0.96142 0.89446 1.60744 1.19380 1.47368 1.03117 1.19603 0.90014 0.85925 0.97739 1.21215 1.20141 1.16396 0.97589 0.91913 1.24988 0.97090 0.95839 0.96637 1.69968 1.33592 1.21379 1.28729 0.86435 0.79669 0.77912 0.83352 1.19666 1.20975 1.21084 0.92418 0.93566 0.91869 0.91437 0.92915 0.92943 0.92632 0.89407 0.92783 0.92437 0.89474 0.85307 0.95355 0.99547 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.08 -1.10 2.36 -90.62 -0.21 -1.32 16 3 C -0.15 -1.59 9.01 37.16 0.33 -1.26 16 4 C -0.11 -1.61 2.46 -89.05 -0.22 -1.83 16 5 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 6 C 0.04 0.60 7.03 37.93 0.27 0.87 16 7 O -0.38 -6.24 11.65 -35.23 -0.41 -6.65 16 8 C 0.02 0.27 7.31 37.93 0.28 0.55 16 9 C 0.06 1.08 2.55 -66.14 -0.17 0.91 16 10 H 0.09 1.64 6.12 -51.93 -0.32 1.32 16 11 N -0.68 -13.97 6.24 -106.33 -0.66 -14.63 16 12 C 0.19 4.95 5.30 -4.97 -0.03 4.92 16 13 C -0.51 -14.39 9.32 -34.44 -0.32 -14.71 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.52 6.42 -51.93 -0.33 0.18 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.04 6.15 -51.93 -0.32 0.72 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.95 7.55 -51.93 -0.39 0.56 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.33 6.56 8.07 -39.29 -0.32 6.24 16 33 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 34 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 279.91 15.07 4.22 4.22 Total: -1.00 -29.23 279.91 -6.75 -35.98 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.78 Total: 2.52 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 0.17 Total: -12.09 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.07 Total: -40.52 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.41 Total: -6.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.23 -6.75 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711000411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.772 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds