Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 C 1.52994 * 109.46991 * 120.00146 * 2 1 3 5 5 H 1.09003 * 110.45844 * 297.39496 * 4 2 1 6 6 C 1.54480 * 110.62806 * 174.70900 * 4 2 1 7 7 O 1.44422 * 104.80471 * 265.27537 * 6 4 2 8 8 C 1.44428 * 105.27650 * 319.49010 * 7 6 4 9 9 C 1.54478 * 104.80451 * 40.50881 * 8 7 6 10 10 H 1.08999 * 110.62849 * 94.72196 * 9 8 7 11 11 N 1.46902 * 110.51231 * 217.38300 * 9 8 7 12 12 C 1.46906 * 110.99573 * 269.64055 * 11 9 8 13 13 C 1.50699 * 109.46990 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99734 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00116 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99947 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47157 * 120.00251 * 17 15 13 20 20 H 1.48502 * 109.47214 * 239.99759 * 17 15 13 21 21 H 1.09002 * 109.46982 * 300.00192 * 1 2 3 22 22 H 1.09006 * 109.46963 * 59.99519 * 1 2 3 23 23 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46713 * 240.00262 * 2 1 3 25 25 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47038 * 299.99602 * 3 2 1 27 27 H 1.09002 * 109.47436 * 60.00085 * 3 2 1 28 28 H 1.09003 * 110.37053 * 24.10578 * 6 4 2 29 29 H 1.09003 * 110.37138 * 146.44353 * 6 4 2 30 30 H 1.09001 * 110.36986 * 281.67881 * 8 7 6 31 31 H 1.08995 * 110.37683 * 159.34412 * 8 7 6 32 32 H 1.00896 * 111.00219 * 33.59695 * 11 9 8 33 33 H 1.09002 * 109.46991 * 299.99841 * 12 11 9 34 34 H 1.09000 * 109.47202 * 60.00133 * 12 11 9 35 35 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5787 -0.8534 1.2113 7 8 3.8231 -2.1605 0.6479 8 6 2.8331 -3.0245 1.2474 9 6 1.5383 -2.1825 1.2735 10 1 0.9269 -2.3909 0.3955 11 7 0.7781 -2.4452 2.5027 12 6 -0.1727 -3.5481 2.3081 13 6 -0.9328 -3.7876 3.5871 14 1 -0.7302 -3.1809 4.4573 15 6 -1.8869 -4.7813 3.6462 16 7 -2.1339 -5.5197 2.5864 17 14 -2.8286 -5.0786 5.2318 18 1 -2.3666 -4.1214 6.2689 19 1 -4.2807 -4.8836 4.9891 20 1 -2.5869 -6.4677 5.6981 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 4.0104 -0.0797 0.5764 29 1 3.9897 -0.7916 2.2190 30 1 3.1299 -3.2957 2.2606 31 1 2.6922 -3.9186 0.6403 32 1 1.3967 -2.6335 3.2772 33 1 -0.8721 -3.2889 1.5133 34 1 0.3708 -4.4521 2.0333 35 1 -2.8053 -6.2185 2.6278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711000411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -83.825116 kcal Electronic energy + Delta-G solvation = -14792.622565 eV Core-core repulsion = 12402.956048 eV Total energy + Delta-G solvation = -2389.666517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93441 -36.75470 -36.36057 -34.43987 -30.79543 -29.69268 -27.91968 -27.48239 -24.08310 -23.81851 -22.14247 -20.63370 -18.64169 -17.39050 -17.07857 -16.64079 -16.36695 -15.35808 -15.27978 -15.00005 -14.49560 -14.37029 -13.79186 -13.40357 -13.16682 -13.02837 -12.88881 -12.79056 -12.53675 -12.41245 -12.25704 -12.04853 -11.61969 -11.41979 -11.34634 -11.13773 -10.73553 -10.65889 -9.10427 -8.23666 -6.34730 1.40768 1.41369 1.55102 2.39043 2.95008 3.10148 3.49612 3.71597 3.82715 3.98838 4.11587 4.15648 4.34369 4.49079 4.57538 4.70404 4.77834 4.80497 4.87587 4.90463 4.98608 5.08236 5.09236 5.23905 5.26977 5.32929 5.51215 5.53663 5.61047 5.80593 6.01684 6.41970 6.69462 6.87558 7.36472 8.88083 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.007112 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.578953 B = 3936.256642 C = 4254.670223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.102 4.102 5 H 0.091 0.909 6 C 0.045 3.955 7 O -0.390 6.390 8 C 0.022 3.978 9 C 0.058 3.942 10 H 0.068 0.932 11 N -0.670 5.670 12 C 0.211 3.789 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.972 3.028 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.336 0.664 33 H -0.002 1.002 34 H -0.038 1.038 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 11.168 -3.091 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.198 4.198 4 C -0.122 4.122 5 H 0.109 0.891 6 C -0.031 4.031 7 O -0.309 6.309 8 C -0.057 4.057 9 C -0.053 4.053 10 H 0.086 0.914 11 N -0.301 5.301 12 C 0.084 3.916 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.186 1.186 19 H -0.205 1.205 20 H -0.204 1.204 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.016 0.984 34 H -0.020 1.020 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.679 11.467 -3.431 14.785 hybrid contribution -0.386 -1.489 0.638 1.665 sum 8.293 9.978 -2.794 13.272 Atomic orbital electron populations 1.21786 0.95708 1.00691 1.01675 1.21037 0.95294 0.97141 0.96488 1.21847 1.01454 0.94131 1.02401 1.22570 0.95066 0.94448 1.00071 0.89091 1.23750 0.94477 0.85287 0.99617 1.89052 1.54473 1.20555 1.66807 1.24166 0.88523 0.94621 0.98393 1.23047 0.92987 0.95427 0.93888 0.91354 1.60634 1.19728 1.44933 1.04780 1.19206 0.90120 0.86276 0.96041 1.21578 1.20704 1.16674 0.98301 0.91645 1.25942 0.98034 0.95444 1.00272 1.70096 1.34321 1.21983 1.31056 0.85292 0.78016 0.78083 0.78944 1.18584 1.20482 1.20353 0.92996 0.91736 0.95092 0.91786 0.91390 0.91757 0.92338 0.86798 0.91425 0.92020 0.90199 0.84597 0.98390 1.01995 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.94 71.98 0.64 -3.36 16 2 C -0.08 -2.02 2.36 -10.79 -0.03 -2.05 16 3 C -0.14 -2.62 9.01 71.98 0.65 -1.97 16 4 C -0.10 -2.86 2.46 -9.78 -0.02 -2.88 16 5 H 0.09 2.61 7.97 -2.39 -0.02 2.59 16 6 C 0.04 1.10 7.03 72.49 0.51 1.61 16 7 O -0.39 -12.16 11.65 -148.98 -1.74 -13.90 16 8 C 0.02 0.73 7.31 72.48 0.53 1.26 16 9 C 0.06 2.05 2.55 45.93 0.12 2.17 16 10 H 0.07 2.70 6.12 -2.39 -0.01 2.68 16 11 N -0.67 -28.18 6.24 -490.31 -3.06 -31.24 16 12 C 0.21 11.22 5.30 85.56 0.45 11.67 16 13 C -0.53 -30.27 9.32 25.60 0.24 -30.03 16 14 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.03 1.05 6.52 -2.39 -0.02 1.04 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.07 1.06 6.42 -2.39 -0.02 1.05 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 2.25 6.15 -2.39 -0.01 2.23 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.00 7.55 -2.39 -0.02 1.98 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.34 13.38 8.07 -89.70 -0.72 12.65 16 33 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 34 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -62.82 279.91 1.40 -61.42 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.33 Total: 16.77 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.55 Total: -23.04 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.77 Total: -87.44 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.74 Total: -13.90 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.82 1.40 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711000411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -62.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds