Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47187 * 2 1 4 4 H 1.08999 * 110.33503 * 304.20409 * 3 2 1 5 5 C 1.54482 * 110.37184 * 181.83302 * 3 2 1 6 6 C 1.54795 * 104.09044 * 217.20037 * 5 3 2 7 7 H 1.09001 * 110.55176 * 118.57275 * 6 5 3 8 8 N 1.46890 * 110.60256 * 241.37426 * 6 5 3 9 9 C 1.46898 * 111.00228 * 299.93525 * 8 6 5 10 10 C 1.46905 * 111.00124 * 175.98195 * 8 6 5 11 11 C 1.50699 * 109.47505 * 190.00070 * 10 8 6 12 12 H 1.08002 * 119.99742 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00629 * 179.97438 * 11 10 8 14 14 N 1.31507 * 120.00558 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99492 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46634 * 90.00283 * 15 13 11 17 17 H 1.48499 * 109.47358 * 209.99962 * 15 13 11 18 18 H 1.48499 * 109.47522 * 330.00417 * 15 13 11 19 19 C 1.54484 * 103.92528 * 359.97438 * 6 5 3 20 20 O 1.44418 * 104.90071 * 24.00274 * 19 6 5 21 21 H 1.08999 * 109.46954 * 299.99577 * 1 2 3 22 22 H 1.08996 * 109.46946 * 60.00110 * 1 2 3 23 23 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47124 * 239.99896 * 2 1 3 25 25 H 1.09002 * 109.47017 * 120.00601 * 2 1 3 26 26 H 1.09002 * 110.50759 * 335.83545 * 5 3 2 27 27 H 1.08997 * 110.50888 * 98.54679 * 5 3 2 28 28 H 1.09000 * 109.47102 * 60.00160 * 9 8 6 29 29 H 1.09000 * 109.47323 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.47049 * 300.00072 * 9 8 6 31 31 H 1.09004 * 109.47162 * 310.00202 * 10 8 6 32 32 H 1.09001 * 109.47285 * 70.00005 * 10 8 6 33 33 H 0.97003 * 119.99812 * 179.97438 * 14 13 11 34 34 H 1.09002 * 110.37173 * 265.11623 * 19 6 5 35 35 H 1.08999 * 110.37313 * 142.89045 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6247 1.9911 -0.8453 5 6 3.5840 1.4670 -0.0463 6 6 3.9694 2.6589 0.8630 7 1 4.5672 2.3178 1.7082 8 7 4.6954 3.6802 0.0964 9 6 5.9295 3.1286 -0.4787 10 6 4.9822 4.8573 0.9273 11 6 5.5017 5.9723 0.0567 12 1 5.6078 5.8218 -1.0075 13 6 5.8405 7.1849 0.6185 14 7 6.2943 8.1578 -0.1411 15 14 5.6549 7.4460 2.4589 16 1 6.9146 7.0583 3.1433 17 1 5.3650 8.8771 2.7292 18 1 4.5379 6.6100 2.9674 19 6 2.6106 3.2109 1.3483 20 8 1.6976 2.0971 1.2408 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9927 0.5373 0.3496 27 1 3.9329 1.6355 -1.0651 28 1 5.6821 2.3019 -1.1447 29 1 6.4471 3.9055 -1.0413 30 1 6.5746 2.7689 0.3228 31 1 4.0687 5.1813 1.4260 32 1 5.7327 4.6003 1.6748 33 1 6.5323 9.0110 0.2542 34 1 2.2846 4.0318 0.7096 35 1 2.6840 3.5429 2.3839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711249759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -48.280197 kcal Electronic energy + Delta-G solvation = -14778.516445 eV Core-core repulsion = 12390.391271 eV Total energy + Delta-G solvation = -2388.125174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50888 -36.24438 -33.47583 -32.58181 -30.48594 -28.14845 -27.68451 -24.48725 -23.40455 -21.45518 -20.75675 -19.54579 -16.97652 -16.03614 -15.72718 -15.52594 -14.43947 -14.14994 -13.80157 -13.33748 -13.32654 -12.95187 -12.50361 -12.33419 -12.16750 -11.66810 -11.44209 -11.14782 -11.06548 -10.84602 -10.60694 -10.56575 -10.40874 -10.11603 -9.82286 -9.47225 -9.28350 -8.60475 -7.47073 -6.07980 -4.05645 3.26125 3.34237 3.35641 4.10065 4.39437 4.72264 4.73835 4.88006 5.16036 5.22863 5.24322 5.35186 5.49013 5.57805 5.72064 5.88398 5.89711 5.97992 6.01987 6.07248 6.13745 6.17325 6.28324 6.29851 6.33054 6.63652 6.80246 6.90118 7.11169 7.55653 7.84205 7.99149 8.61947 9.00133 9.53535 11.05055 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049743 B = 0.007191 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.757981 B = 3893.016391 C = 4165.952645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.077 3.923 4 H 0.069 0.931 5 C -0.144 4.144 6 C 0.048 3.952 7 H 0.043 0.957 8 N -0.522 5.522 9 C 0.034 3.966 10 C 0.158 3.842 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.054 3.946 20 O -0.377 6.377 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.011 0.989 31 H 0.030 0.970 32 H -0.016 1.016 33 H 0.264 0.736 34 H 0.076 0.924 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 -14.313 1.469 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.087 0.913 5 C -0.182 4.182 6 C -0.061 4.061 7 H 0.061 0.939 8 N -0.247 5.247 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.701 3.299 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.023 4.023 20 O -0.296 6.296 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.002 0.998 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.440 -14.032 1.244 15.931 hybrid contribution 0.777 0.176 1.558 1.750 sum -6.662 -13.857 2.803 15.628 Atomic orbital electron populations 1.21718 0.95490 1.01128 1.02358 1.21591 0.96552 0.94949 1.02331 1.22974 0.93764 0.93445 0.87890 0.91259 1.23108 0.95698 0.97747 1.01634 1.23010 0.95809 0.92488 0.94824 0.93945 1.62112 1.22190 1.05506 1.34899 1.22287 0.91058 0.99639 0.98394 1.20243 0.95308 0.88713 0.92508 1.21013 1.42354 0.95172 0.96294 0.90078 1.24888 0.94797 0.95882 0.97677 1.69887 1.44493 1.04084 1.35366 0.86882 0.78951 0.77630 0.86416 1.20338 1.21057 1.19172 1.23464 0.87604 0.89638 1.01619 1.89054 1.56974 1.43470 1.40091 0.92042 0.92847 0.93085 0.90944 0.91427 0.91312 0.89483 0.93088 0.89950 0.97004 0.95190 0.99828 0.92618 0.90585 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.83 37.16 0.37 -1.19 16 2 C -0.12 -1.29 5.57 -26.73 -0.15 -1.44 16 3 C 0.08 1.07 3.27 -25.96 -0.08 0.99 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.14 -2.07 5.79 -25.01 -0.14 -2.21 16 6 C 0.05 0.85 2.85 -65.99 -0.19 0.66 16 7 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 8 N -0.52 -10.83 4.55 -234.26 -1.07 -11.90 16 9 C 0.03 0.65 9.10 60.06 0.55 1.20 16 10 C 0.16 3.82 3.65 -4.97 -0.02 3.80 16 11 C -0.51 -14.39 9.01 -34.44 -0.31 -14.70 16 12 H 0.08 2.48 7.37 -52.49 -0.39 2.10 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 15 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 19 C 0.05 0.93 5.92 37.94 0.22 1.15 16 20 O -0.38 -6.16 11.00 -35.23 -0.39 -6.54 16 21 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 27 H 0.09 1.25 6.49 -51.93 -0.34 0.91 16 28 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 29 H 0.08 1.73 6.76 -51.93 -0.35 1.38 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.03 0.73 5.83 -51.93 -0.30 0.42 16 32 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 275.68 15.07 4.15 4.15 Total: -1.00 -29.95 275.68 -6.93 -36.88 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.88 Total: -2.87 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 0.14 Total: -9.84 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.29 Total: -38.54 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.39 Total: -6.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.95 -6.93 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711249759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.403 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds